Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02564 ATGTCCAACAGGGTTTGCAAGTTCTATGCCCGTGGGGTATGTTTGAAAGGAGAGCAATGTGATTTTTCTCATGAGAGAAAGGATCCTCCAGTTGATATATGCACGTATTATCAAAAAGGGTTCTGTGCTTATGGTAGTAGATGCAGATATAAGCATGTCAAAGCTTCTCAAGCATCATCTTCTGCCGATGGACGCCAGTCTCTGGTTTCAGATTCTGCTGTGGCTCATACTACTAAAGGAACATCGAGTTGGGTACCAAAGGCTACGAAGTTGTCCTCATCTGACAAGCGTGTGAGGAGTTTACAACGTAAGCATCAGGACTCTATGGGGAATGGTGATGTTGGTGAATCCAGTACGAGTAGTGCTATACCATCTGAACATTTATTTTGTCCATTTGCTGCTGCCAACTGCCCATTAGGAGATAAATGTTCTCGCATTCATGGAAATCAGTGTTTATACTGTAGAAAATATTGCTTGCATCCTACTGATCGAAAGGAAAAAGAAAATCATTTTAGGACTTGTGAGAAAAAGGAAAAATACCTTCAGGCTTTGAAAGATAGTCAAGAAATAGAATGCAATGTTTGTTTAGAGCGTGTTCTTTCCAAACCCAAGCCATCTGAATGTAAGTTTGGGCTGCTTCCTGAATGTGATCATGCTTTCTGTTTATCCTGTATCCGCAATTGGCGAAATAGTGCCCCGACCACTGGAATGGACATCAATAATAATGCTAATACAGTGAGAACCTGCCCTGTTTGCCGCAAACTATCTTATTTTGTTATTCCAAGTGGTATTTGGTATTCTACAAAGGAAGAAAAACTGGAAATTATTGATAACTACAAAGCAAACTGCAAATTGATTGATTGCAAGCATTTTAACTTTGGAAATGGGAATTGTCCATTTGGAACTAGTTGTTTCTATAAGCATACAGTGAAGCCTGGCTCATACACATGGATACATAACAGGCCGCCACCTCATCGTAGACCAAACAATTTTGATATGTATGACATGTTGGATATGCTCAGTGAAGTTGATTTATCAAGTGGGGAATTTTATTCCATCATGAGGGACTCGGAGTTTTTTGATGATATGGATCCATTGGATATGATGACTATATCAGATACGCTGGCTAGTGGATCAGGTCCTTGTTTGGGTCCCTTTGATTCTGATGAGGATGATGACTTGGATATTTTTCAGATGGCTGCTTTGTCAGAGGCACTGGTTGCTGGTGTGGATGATTTTGGCCCTGAAGATTTTGACAATGAAGAATTGAATCCTATGGAGGCAGCCTTGTTGTCAATGATGATGCATTCTAATATGGAAGAAGAAGAAGAATACAGTGATGAAGACTACTAG 1353 0.4013 MSNRVCKFYARGVCLKGEQCDFSHERKDPPVDICTYYQKGFCAYGSRCRYKHVKASQASSSADGRQSLVSDSAVAHTTKGTSSWVPKATKLSSSDKRVRSLQRKHQDSMGNGDVGESSTSSAIPSEHLFCPFAAANCPLGDKCSRIHGNQCLYCRKYCLHPTDRKEKENHFRTCEKKEKYLQALKDSQEIECNVCLERVLSKPKPSECKFGLLPECDHAFCLSCIRNWRNSAPTTGMDINNNANTVRTCPVCRKLSYFVIPSGIWYSTKEEKLEIIDNYKANCKLIDCKHFNFGNGNCPFGTSCFYKHTVKPGSYTWIHNRPPPHRRPNNFDMYDMLDMLSEVDLSSGEFYSIMRDSEFFDDMDPLDMMTISDTLASGSGPCLGPFDSDEDDDLDIFQMAALSEALVAGVDDFGPEDFDNEELNPMEAALLSMMMHSNMEEEEEYSDEDY* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02564 450 ProSitePatterns Zinc finger RING-type signature. 216 225 IPR017907 -
Rops7g02564 450 MobiDBLite consensus disorder prediction 80 120 - -
Rops7g02564 450 MobiDBLite consensus disorder prediction 92 110 - -
Rops7g02564 450 Gene3D - 32 84 - -
Rops7g02564 450 ProSiteProfiles Zinc finger RING-type profile. 192 253 IPR001841 -
Rops7g02564 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 283 IPR013083 -
Rops7g02564 450 SUPERFAMILY RING/U-box 181 259 - -
Rops7g02564 450 Pfam RNA-binding, Nab2-type zinc finger 287 308 - -
Rops7g02564 450 Pfam RNA-binding, Nab2-type zinc finger 6 24 - -
Rops7g02564 450 Pfam RNA-binding, Nab2-type zinc finger 130 148 - -
Rops7g02564 450 Pfam Zinc finger, C3HC4 type (RING finger) 192 252 IPR018957 GO:0046872
Rops7g02564 450 Gene3D - 1 31 - -
Rops7g02564 450 SUPERFAMILY CCCH zinc finger 30 52 IPR036855 GO:0046872
Rops7g02564 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 53 IPR000571 GO:0046872
Rops7g02564 450 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Rops7g02564 450 PANTHER MAKORIN-RELATED 1 331 IPR045072 GO:0000209|GO:0061630
Rops7g02564 450 CDD RING-HC_MKRN 190 253 - -
Rops7g02564 450 ProSiteProfiles Zinc finger C3H1-type profile. 282 311 IPR000571 GO:0046872
Rops7g02564 450 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Rops7g02564 450 SMART c3hfinal6 282 310 IPR000571 GO:0046872
Rops7g02564 450 SMART c3hfinal6 125 149 IPR000571 GO:0046872
Rops7g02564 450 SMART c3hfinal6 28 54 IPR000571 GO:0046872
Rops7g02564 450 SMART ring_2 192 252 IPR001841 -
Rops7g02564 450 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Rops7g02564 450 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02564 Rops-Chr7 48204390 48212902 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops7g02564 zf-C3HC4 7.5e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02564 K15687 - gmx:100788886 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g02564 7 48204390 48212902 Rops7g02564 7 48204390 48212902 ECH