Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02558 ATGACAGATCCTATATCCAATTTATACACTAAGTGGTTCCACTTCATGCCCCTTCATCCTCACCGCTCTTCTTTTGCTTCTCAATCTAACCTCTTCTCCTCTTGCCCTCTTGCATACTCAAACAGCAAATTTTCCATTCAATTTGAAACCTCTTCCTCTTCTGCTGATCCTCCTTCCCCTCCTCTCAGAGAAGCCCTTCCTCTGTTAAACAACATAAGCCTCACAAAACAGAACCAAAATGAACCCTCAAACAGTGTTAGTAGTGATATTGAAGAGGAAGGGGAAAAGAAAAGGGACAAAGATGAGAATCTTTTGACTAGTACTGAAGATGTTGATGATGAAACTGTGACTGTAGCACTACGCATAGGGCTTCCTAGCATGGCTACTTCTGATCTGGGATCAAGGAAGATCTCAAGTTCTTCACAAATGGGTGAAAAAGGAGAAAGGAATGTGATTTCTGGACACCCTTTGAATAGATTAAACAAGATTGTTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCATGTTCAGTTTGCTCCAAGACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATATAGAAAGGGGCCTGATGCTCTAAAAGGAACACAACCATCTGCTATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACTCTTCAGACACATTACAAGAGAAAGCATGGCATCAAACCCTACATGTGCAGAAAATGTGGCAAAGCGTTTGCAGTTAAAGGTGATTGGCGGACACATGAGAAGAACTGTGGCAAAATTTGGTATTGTTTATGTGGGTCTGATTTTAAACATAAAAGATCTCTAAAAGACCACATAAAGTCCTTTGGCCATGGCCATGGAGCTATTGACATTGATTGCATGCAAGATGAAGATGAAGCAGCCTCTGAAATTGAACATGATGAGGATAGCTCTTTGTGA 1029 0.4169 MTDPISNLYTKWFHFMPLHPHRSSFASQSNLFSSCPLAYSNSKFSIQFETSSSSADPPSPPLREALPLLNNISLTKQNQNEPSNSVSSDIEEEGEKKRDKDENLLTSTEDVDDETVTVALRIGLPSMATSDLGSRKISSSSQMGEKGERNVISGHPLNRLNKIVQYWIPTPSQILIGPTQFSCSVCSKTFNRYNNLQMHMWGHGSQYRKGPDALKGTQPSAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKSFGHGHGAIDIDCMQDEDEAASEIEHDEDSSL* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02558 342 MobiDBLite consensus disorder prediction 89 105 - -
Rops7g02558 342 SMART c2h2final6 265 285 IPR013087 -
Rops7g02558 342 SMART c2h2final6 181 203 IPR013087 -
Rops7g02558 342 SMART c2h2final6 291 314 IPR013087 -
Rops7g02558 342 PANTHER ZINC FINGER PROTEIN WIP2 30 338 IPR043584 GO:0003700|GO:0010468
Rops7g02558 342 FunFam zinc finger protein WIP2-like 180 203 - -
Rops7g02558 342 SUPERFAMILY beta-beta-alpha zinc fingers 175 203 IPR036236 -
Rops7g02558 342 MobiDBLite consensus disorder prediction 130 152 - -
Rops7g02558 342 ProSitePatterns Zinc finger C2H2 type domain signature. 183 203 IPR013087 -
Rops7g02558 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 265 285 IPR013087 -
Rops7g02558 342 FunFam Zinc finger protein WIP2 234 316 - -
Rops7g02558 342 Gene3D Classic Zinc Finger 243 318 - -
Rops7g02558 342 MobiDBLite consensus disorder prediction 74 110 - -
Rops7g02558 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 181 208 IPR013087 -
Rops7g02558 342 Gene3D Classic Zinc Finger 180 203 - -
Rops7g02558 342 SUPERFAMILY beta-beta-alpha zinc fingers 249 285 IPR036236 -
Rops7g02558 342 MobiDBLite consensus disorder prediction 131 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02558 Rops-Chr7 48022143 48024539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02558 1 335 C2H2 Transcription Factor Family AT3G57670 53.600 3.57e-122 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops7g02558 zf-C2H2_6 5.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02558 - - vra:106761045 538.11