Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02555 ATGGATTTCTTTGAAGGCCTCACACATCATGTGCCTGTGAATTATGCCCATGCCGGCTCAATGCTTGATCAGGAAAGTGTCTACTGGTCAATGAACATGAACCCATATAAGTTTGGATTGTCTGGCCCTGGGAGTACATCTTATTATGGTTCTTATGAGGTAAATGATCATTTTCCAAGAATGGAGGTCAATAGGGGAGAGTGGGAATACCCTTCGACACTGACCGTGGAGGAACCGGCTACAACAGACTCTCCATCTGGAAGAGATGGAGTCACAAGCATGCAGACCATTCCCGAAGAATGCAGTCCAAATCACCAAGAATCCAGTAGTAGCCAGGTCATATGGCAAGACAACATTGATCCTGATAATATGACTTATGAGGAACTACTGGACCTGGGTGAGGCAATGGGAACTCAAAACCGAGGTCTTTCCGAAGAACTTATTGACATGCTTCCAACCTCAAAGTACAAATTTGGGAGCTTATTCAAAAGAAAAAACTCTGGGAAAAGGTGTGTGATTTGTCAGATGTCATATAAAAGAGGTGACCAGCAAATAAAATTGCCATGCAGCCATGTTTACCATGGTGAATGCATTACAAAATGGCTTAGCATTAACAAGAAATGTCCGGTTTGTAATACTGAAGTATTTGGTGAGGAATCAACTAATTAA 669 0.4215 MDFFEGLTHHVPVNYAHAGSMLDQESVYWSMNMNPYKFGLSGPGSTSYYGSYEVNDHFPRMEVNRGEWEYPSTLTVEEPATTDSPSGRDGVTSMQTIPEECSPNHQESSSSQVIWQDNIDPDNMTYEELLDLGEAMGTQNRGLSEELIDMLPTSKYKFGSLFKRKNSGKRCVICQMSYKRGDQQIKLPCSHVYHGECITKWLSINKKCPVCNTEVFGEESTN* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02555 222 SUPERFAMILY RING/U-box 170 216 - -
Rops7g02555 222 FunFam E3 ubiquitin ligase BIG BROTHER 133 216 - -
Rops7g02555 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 216 IPR013083 -
Rops7g02555 222 Pfam Ring finger domain 170 212 IPR001841 -
Rops7g02555 222 ProSiteProfiles Zinc finger RING-type profile. 171 212 IPR001841 -
Rops7g02555 222 SMART ring_2 171 211 IPR001841 -
Rops7g02555 222 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 218 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02555 Rops-Chr7 47906717 47912152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02555 1 220 C3H Transcription Factor Family AT3G63530 56.561 3.55e-92 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02555 K19045 - gmx:100792734 400.979