Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02548 ATGAACATGAACAACAACAACATTAAGAGCAAGCTAAGGAAAGGTTTGTGGTCACCTGAGGAAGATGAGAAGCTCATCAGGTACATGATAACTAAGGGACAAGGGTGTTGGAGTGACATTGCTAAGAATGCTGGTCTTCAAAGGTGTGGTAAAAGTTGCCGTCTTCGTTGGATTAATTACTTGAGACCTGATCTCAAACGTGGTGCATTTTCACCACAAGAGGAAGAGCTCATTATCCATTTGCACTCCATTCTTGGCAACAGATGGTCTCAGATTGCTGCACGTCTCCCTGGTCGCACAGACAATGAGATAAAGAATTTCTGGAACTCCACACTGAAGAAGAGATTGAAAATGAACAACTCCACCCCATCTCCAAACAACAGTGACTCATCAGAACCAAGAGATCTTTTGGGTGAGATCATGCCAATTAATGAACAAGAACTCATCACAATGTGCATGGATTCCTCTTCATCAACTTCATCATCATCCATGCACAACAACAACATGCATGCCATGGTTTTATCTGACCAATTTGATCCCTTTACCTTATTGTCCAACCGTTATGACATAACAGGTTCAGCCGGTTTCCCTGACATGCCTGCATGCTTAACCCAAGTTGGTATGGTAGATGGGTTTCATGGTGATTATGGGATTTTGGAGCCTAATAAAATGGGTTTAGAAAGTGACTTTTCCCTTCCTCCACTAGAGAGTAGGAACATTGAAGACAACAGTACCACAATTGATGTGAAAAGGCATAACAACCACTTTAATAATAATAGTTGCTTCAATAACACTGATCACATTCAGGGTTCCAATGTAGAGGACTTGTTTGGGTTTGGAAATCATGGGCAAGGGGAAAACTTAGGAATGGGAGAATGGGACTTGGAGCGTTTGATGCAAGACATACCCTATTTTCCTTCCCTTGATTTCCAAAATGAGAAAGAGGAATTCCAAAAAAGGAATGTCGAGTTGGAAGGTAGTGTTGCCAGCGTGAAGTCTTTGGAAGAGGAGCTCGATGCGTTGCGGGCAGCCAAAAAGTTGAACGATGAGCAGGTCTCTAAGTTGACTACTGAGAAGGCTAAACTTGTTGAAAAACATGATGAAGAGAAGAAGGCTTGGCAACAGAAGATTGTCGAGCTTGAGAACCAGATTGAAGAAGAGGCCGCTTATCAGTACACTTAA 1182 0.423 MNMNNNNIKSKLRKGLWSPEEDEKLIRYMITKGQGCWSDIAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKMNNSTPSPNNSDSSEPRDLLGEIMPINEQELITMCMDSSSSTSSSSMHNNNMHAMVLSDQFDPFTLLSNRYDITGSAGFPDMPACLTQVGMVDGFHGDYGILEPNKMGLESDFSLPPLESRNIEDNSTTIDVKRHNNHFNNNSCFNNTDHIQGSNVEDLFGFGNHGQGENLGMGEWDLERLMQDIPYFPSLDFQNEKEEFQKRNVELEGSVASVKSLEEELDALRAAKKLNDEQVSKLTTEKAKLVEKHDEEKKAWQQKIVELENQIEEEAAYQYT* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02548 393 CDD SANT 69 112 IPR001005 -
Rops7g02548 393 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops7g02548 393 PANTHER MYB DOMAIN PROTEIN 55 7 265 - -
Rops7g02548 393 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops7g02548 393 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Rops7g02548 393 MobiDBLite consensus disorder prediction 115 135 - -
Rops7g02548 393 SMART sant 66 114 IPR001005 -
Rops7g02548 393 SMART sant 13 63 IPR001005 -
Rops7g02548 393 CDD SANT 17 61 IPR001005 -
Rops7g02548 393 FunFam Transcription factor MYB46 68 136 - -
Rops7g02548 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops7g02548 393 Gene3D - 68 136 - -
Rops7g02548 393 MobiDBLite consensus disorder prediction 115 133 - -
Rops7g02548 393 Gene3D - 11 67 - -
Rops7g02548 393 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops7g02548 393 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops7g02548 393 Coils Coil 324 390 - -
Rops7g02548 393 FunFam MYB transcription factor 11 67 - -
Rops7g02548 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02548 Rops-Chr7 47684656 47689766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02548 6 311 MYB Transcription Factor Family AT3G08500 48.665 1.27e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops7g02548 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02548 K09422 - gmx:100813660 453.751