Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02539 ATGGCTCCTCAAATTGATCCGTTGGAGAAAATTAATCCTTCTAGGGAATGTTGGAGGGTGAAAGTACGGATCATTCGTTTGTGGTGCTTACCAAGCATAAATAATAAGGATGTTCTTAATAGCTTGGAGATGGGATTCACTATTCATGCCACTGTGAGGAAAACGTTAGTCTATAAATTTAAGTCCTTACTTGAAGAAGGACAGGTTTATGTAATGGCTTATTTTGGCGTAGGTGAAAATACAGGGAAAAAAGTATTGCAGAATGTCATGTATGGGACTCGGTTGTTATTTAATCCTGACATTCCAGAAGTATCTGAACTGAGGAATAAGTTGGAGTCTTCAACTGCTGATTTGTCTCAAGGATTAAGTGTGATATCTGATTCTCCAAGTTATAGTTTTGAAGAAGATTTTTTAAAAGCAACTCCTCCCAAGTCTATAGAGGAATTAAAAGATTGTAAATATACTGGATTCTATGTTGTTTTGGCTACCATCAAATCTGTTACCAATGGTCCCGACTGGTGGTATTCAGCTTGCAAGTGCAACAAAGCTGTTCATCCAGATTCTGGCATGTACTATTGTGAAAGGTGTTATTGTCACGTAGTTAATGTTATACCAAGGTATCGGATCAAGGTCAGGGTTGTAGATGCCCTTGAGAGTGCTACTTTTGTTGTCTGGGATCGGGACGGGACTGTCCTACTTAAGAAGTCATGCTCCAATCTTCTAGAGAGTTTAAAAAATGGAGGAGGTCCAACTTCTCATCCTCCAGATTTTGATGAGTATCTTATTGATAAGGAATTCTTATTTAAGGTTGATTTGAGATCTCTGGTCAGCTCAGATTTTGGAACTTCGTATAATGTTGTTAGGGTCTGTACTGATGACAAAATTATCAGTAAATTTAGAGAAATCTATGGTTTGAACAAATGTGCAGAGCCTGATATGACTGAAGGGATTTCTTTGGGAGATACTTCATCAAGTATGGGTCTGCAAGATGTGCAGTCTATATGGACAAAGGATGAATTGCATCATGTTTCTGAACAAGATGTTTATCTTAGTTCTCAAGCTGAAAATACTGAGGCTCAACTGACTCCTCATAAGAGGCCTTTCCCAGATGTTGATGAGAATCAGGATTGTGACATGTTATTGGTTTATGTTTATGGTTTTCGAATTACTGTGTGTTTGTTTATGCTGCTCGAAAGCCATGATGAGCATGTGCTTTATGGCATGTTTGAAAACATATCGGTTTTGCCGTAGATTTCGATGATGGCCGGTTCTGAATCCTCTTCCCGTCGTCGAAGGTTTCCTATAACTGTTGTTGTGGCCAATGTTTCTAACAAGGGCTATGGCATCTTGCCACATGAATTCAGTGATGAATTCACGCCTTCAATAGGGTCCTACGCAAAAATTATTACAAACAAAGGAGATATGTACGAGGTTGATTTCCGACTAACAAGCAAAGGGGGTTGTTTTACACATGGTTGGAGTGATTTTATTAATAAGACTTCTCTACATGGAGTCTCTGATGTCGTGCTGAAATACCATGGTTTATTGTGGTTCAAAATCGAAAATGATGATCAGATTCAAGTAAAAAAAGAAGTTGAACCTGCTTCCATGCATGAAATCAATCTGACTCGCTACTCCATTAAATTCCAACAGAACCTCCCATATGATTTTGTTGATCAATGTCTTAACTTGAATTGCAACTCGATTACTTTGAAAGTTGAAGATGGGAGATCATGGGAGTGCGGATTGTACCATCATCCAGACAGAAACAAAAATGAGGCAAGGATCAACACCGGTTGGAAACAATTTGCCAAAGATTTGAAGTTGAAGACATCTAATCGGATTTTTTTCAAGTGCTGGAACGTGAAACCAATTTGGTTCTTGCTGTGA 1890 0.3857 MAPQIDPLEKINPSRECWRVKVRIIRLWCLPSINNKDVLNSLEMGFTIHATVRKTLVYKFKSLLEEGQVYVMAYFGVGENTGKKVLQNVMYGTRLLFNPDIPEVSELRNKLESSTADLSQGLSVISDSPSYSFEEDFLKATPPKSIEELKDCKYTGFYVVLATIKSVTNGPDWWYSACKCNKAVHPDSGMYYCERCYCHVVNVIPRYRIKVRVVDALESATFVVWDRDGTVLLKKSCSNLLESLKNGGGPTSHPPDFDEYLIDKEFLFKVDLRSLVSSDFGTSYNVVRVCTDDKIISKFREIYGLNKCAEPDMTEGISLGDTSSSMGLQDVQSIWTKDELHHVSEQDVYLSSQAENTEAQLTPHKRPFPDVDENQDCDMLLVYVYGFRITVCLFMLLESHDEHVLYGMFENISVLP*ISMMAGSESSSRRRRFPITVVVANVSNKGYGILPHEFSDEFTPSIGSYAKIITNKGDMYEVDFRLTSKGGCFTHGWSDFINKTSLHGVSDVVLKYHGLLWFKIENDDQIQVKKEVEPASMHEINLTRYSIKFQQNLPYDFVDQCLNLNCNSITLKVEDGRSWECGLYHHPDRNKNEARINTGWKQFAKDLKLKTSNRIFFKCWNVKPIWFLL* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02539 628 Gene3D - 3 100 IPR012340 -
Rops7g02539 628 Pfam B3 DNA binding domain 551 618 IPR003340 GO:0003677
Rops7g02539 628 Gene3D - 138 298 IPR012340 -
Rops7g02539 628 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 434 625 IPR039218 -
Rops7g02539 628 SUPERFAMILY Nucleic acid-binding proteins 5 105 IPR012340 -
Rops7g02539 628 ProSiteProfiles B3 DNA-binding domain profile. 552 628 IPR003340 GO:0003677
Rops7g02539 628 CDD B3_DNA 544 617 IPR003340 GO:0003677
Rops7g02539 628 CDD RPA1_DBD_C 157 270 IPR047192 -
Rops7g02539 628 Pfam Replication factor-A C terminal domain 157 245 IPR013955 -
Rops7g02539 628 Gene3D - 518 626 IPR015300 -
Rops7g02539 628 SUPERFAMILY DNA-binding pseudobarrel domain 540 618 IPR015300 -
Rops7g02539 628 CDD RPA1_DBD_A_like 19 83 - -
Rops7g02539 628 SUPERFAMILY DNA-binding pseudobarrel domain 426 510 IPR015300 -
Rops7g02539 628 SUPERFAMILY Nucleic acid-binding proteins 142 271 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02539 Rops-Chr7 47414414 47419553 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops7g02539 Rep_fac-A_C 7.2e-11 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02539 - - vun:114169438 213.001