Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02349 ATGTCTCCATGCCCCGATGATTACGAACAAGATAACCACTCCGATGATGAAGACGATGAAGGCCTCAAGGAAGACATGGCTGCGCTTGCACGAGCCTGCATGATCACAGCAGCTCCTGATAAAATTCACACTGAGGAGGACGACCCGTTATTGAATGCCGGAGACACTGTCGTCCCCGTTGTCGCTGCCAATGATTCTGACTCCGACGATGAGGATGAAACGAGTGATCTTGAATGTCTTAAGAGAGTGCAGAATCTCTATAAGCCTTGCATTTCTCCTCCGCCGATGACGATGATGACGACAGCTTCATCGGACAGTGAAGATGATTTGGAGACTGTCCGTGCCATTTTCAAACGATTTTCCAACTATGATGGAGATACCCCTGAAGGCGGAATGGTAGCATTGACCAAAGGGGACCAGGCCTGGAGCCTAGGCTGTGAGGGTGACATTGCTAATGGCTCCATCTCTCACATATCAGATGCTGGTGGTGAATCGTGCCCTGATTCTCAAGATCCCGATACCACTGATTTGGTTACTGGTGACATCAAAATACAGCATGGTGATTTTGTTGACAGTTATGAGCCTGATGTGGGTGGTGAATTGTGCCCTGTTCCTCAATATCCTGATACCACCAATTCGGTGACTGGTGGCGTTGAAATGCAGCTTAATAATTTTGTTGACAGTTATGAACCTGATGCTGGTGAGTCATTCAACTTACCACAAAAAAGATCAAACTTTCCTCCGGCAGTTCATTCTTTAGTTGATGCTATTAAGAAGAATAGGGCTTTACAGAAATTTCTTAGAAGTAAGTTGGTCGTGCTTGAAGCAAAAATTGAGGAAAGCAAACAGATAAGGAGCAAAGTTAAAATCCTTAGGGACTTCCAGATTTCATGCAGTAGAAGAACAGGGAATGTTTTATCACTAAAAAAGGATCCTCGTGTCCAATTGATATCAACAAGAAAGAGTCCTGCTCCAAATAATTCAAAGAGCCAGCATAAAAAGGTATCTCCAATGTGTTATGGCCCAGCTGAGAATTCTCGTGTCGCAAATTATAAGATGGTACTGCAAAGATTTCCACTTTCAGTAGATCGGAAAAAATGGTCTGATGTGGAAAGGGAAAATCTTTCGAAGGGAATTAAGCAACAATTCCAAGAAATGGTGCTTCAAATTTCAGTGGATAGAGTAAGTTCGGAGCACTCATCTGGAGATTCAAATGACATGGATAACATAATTGCATCTGTTAAAGATCTTGAAATTACACCAGAGAGAATTAGAGAATTTTTACCCAAAGTTAATTGGGATCGGTTGGCTTCCATGTATGTTGCTGGTCGTACTGGTGCTGAATGTGAATCAAGGTGGTTGAATTGTGAAGATCCTTTGATCAACCATGGCCCCTGGACTGGTGAGGAGGATAGATCACTTATGATTATTGTCCAAGATAACGGCATTAGGAACTGGTTTAATATAGCTATGTCATTGGGTATGAATAGGACTCCATTTCAATGCTTGGCTCGATACCAAAGGAGCTTAAATCCTTCAATGTTAAATAGTGAATGGACTGAGGAAGAAGATGCTCAACTTAGTTCTGCTGTTTCATTTTTTGGTAAGAGCGATTGGCAGTCTGTGGCTTCTGTTTTAGAACGGCGAACAGGAACCCAGTGCTCAAATAGGTGGAAAAAATCGCTTTGTCCTGTGAGGAAAGGGAGCTTCACTCTAGAGGAGGATAAACGCCTAACGGTAGCAGTCATGCTTTTTGGACGGAAATGGAATCAAATAGCTAAATATGTTCCTGGCCGGATCCAATCTCAGTGTAGGGACAGATACCTTAATAGCTTGGATCCTTCTTTGAAATGGGGTGGATGGACTGAGGAAGAGGATTCAAGATTAGCAGCTGCAATTGCCAAACATGGATTTTGCTGGTCTAAGGTGGCTGAAGATGTGCCTCCCCGTACTGATTCTCAATGCCGAAAGAGGTGGAAGGTGTTATGTCCTGGTCAAGTTCCTTTGCTTCAAGAAGCAAGAAAGAGGCAAAAGTCTCTTATTGCTAGTAACTTTGTTGATCGGGAATCTGAACGCCCAAACCTTACACTGAATGACTTTCTTCCTATACAAATGTTAGCTTCGTCATCTGATACTGGTGCTGTCAATCCCCAAAGGAAGCAGAAGAGCAAGTCCAGCAATGTTTCCAAGAAAACAAGGTCTAAAAAACATGCAGAAGAGGCTCAAGATTGCCTTAAGGATGTGCAAGATATAGCGGTACATAGTCGTAAGGTCAAATCTCGTGCAAGAGGTGTTCCACTCAATGCATTCAGCAATGTTCCCAAGAAAAAGAGATCCAAAACACATGCAAAAAAGGCTAGAATACCTCCCAAGGGAGTAGAGGATATAACATGTAGTGACAAGGTCAAGACTAGTGCTGTGAATTCAGAAAGACAAGATTGGGATGTGACTCTTGCATCCTTTTTACATGCAATATCAAAGAAGAGACAATCTAAATGTTCCAAAAGTCAGGATTCCTTTTCCTCTAGGACAACAGTTGTATCTGATAATAACCCACCCAGTGGTCAGACCCATGGTCTGATGGGCCATAAGCCCATAATAGTTTATACTAGAAGAAAGAAAGAGAAATAGAAATATAGAGAAGAAGATGGCTGA 2655 0.4256 MSPCPDDYEQDNHSDDEDDEGLKEDMAALARACMITAAPDKIHTEEDDPLLNAGDTVVPVVAANDSDSDDEDETSDLECLKRVQNLYKPCISPPPMTMMTTASSDSEDDLETVRAIFKRFSNYDGDTPEGGMVALTKGDQAWSLGCEGDIANGSISHISDAGGESCPDSQDPDTTDLVTGDIKIQHGDFVDSYEPDVGGELCPVPQYPDTTNSVTGGVEMQLNNFVDSYEPDAGESFNLPQKRSNFPPAVHSLVDAIKKNRALQKFLRSKLVVLEAKIEESKQIRSKVKILRDFQISCSRRTGNVLSLKKDPRVQLISTRKSPAPNNSKSQHKKVSPMCYGPAENSRVANYKMVLQRFPLSVDRKKWSDVERENLSKGIKQQFQEMVLQISVDRVSSEHSSGDSNDMDNIIASVKDLEITPERIREFLPKVNWDRLASMYVAGRTGAECESRWLNCEDPLINHGPWTGEEDRSLMIIVQDNGIRNWFNIAMSLGMNRTPFQCLARYQRSLNPSMLNSEWTEEEDAQLSSAVSFFGKSDWQSVASVLERRTGTQCSNRWKKSLCPVRKGSFTLEEDKRLTVAVMLFGRKWNQIAKYVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDSRLAAAIAKHGFCWSKVAEDVPPRTDSQCRKRWKVLCPGQVPLLQEARKRQKSLIASNFVDRESERPNLTLNDFLPIQMLASSSDTGAVNPQRKQKSKSSNVSKKTRSKKHAEEAQDCLKDVQDIAVHSRKVKSRARGVPLNAFSNVPKKKRSKTHAKKARIPPKGVEDITCSDKVKTSAVNSERQDWDVTLASFLHAISKKRQSKCSKSQDSFSSRTTVVSDNNPPSGQTHGLMGHKPIIVYTRRKKEK*KYREEDG* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02349 883 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 613 667 IPR017930 -
Rops7g02349 883 ProSiteProfiles Myb-like domain profile. 511 562 IPR001005 -
Rops7g02349 883 ProSiteProfiles Myb-like domain profile. 458 510 IPR001005 -
Rops7g02349 883 Gene3D - 566 616 - -
Rops7g02349 883 Gene3D - 617 665 - -
Rops7g02349 883 MobiDBLite consensus disorder prediction 827 883 - -
Rops7g02349 883 SUPERFAMILY Homeodomain-like 439 506 IPR009057 -
Rops7g02349 883 MobiDBLite consensus disorder prediction 710 741 - -
Rops7g02349 883 MobiDBLite consensus disorder prediction 835 857 - -
Rops7g02349 883 MobiDBLite consensus disorder prediction 1 24 - -
Rops7g02349 883 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 458 514 IPR017930 -
Rops7g02349 883 CDD SANT 465 510 IPR001005 -
Rops7g02349 883 Gene3D - 462 513 - -
Rops7g02349 883 Pfam Myb-like DNA-binding domain 466 527 - -
Rops7g02349 883 CDD SANT 621 662 IPR001005 -
Rops7g02349 883 ProSiteProfiles Myb-like domain profile. 566 612 IPR001005 -
Rops7g02349 883 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 519 566 IPR017930 -
Rops7g02349 883 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 567 612 IPR017930 -
Rops7g02349 883 CDD SANT 569 612 IPR001005 -
Rops7g02349 883 Gene3D - 517 565 - -
Rops7g02349 883 CDD SANT 518 562 IPR001005 -
Rops7g02349 883 SMART sant 566 614 IPR001005 -
Rops7g02349 883 SMART sant 462 512 IPR001005 -
Rops7g02349 883 SMART sant 515 564 IPR001005 -
Rops7g02349 883 SMART sant 617 665 IPR001005 -
Rops7g02349 883 SMART sant 363 459 IPR001005 -
Rops7g02349 883 SUPERFAMILY Homeodomain-like 592 663 IPR009057 -
Rops7g02349 883 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 13 848 - -
Rops7g02349 883 SUPERFAMILY Homeodomain-like 514 608 IPR009057 -
Rops7g02349 883 ProSiteProfiles Myb-like domain profile. 613 663 IPR001005 -
Rops7g02349 883 Pfam Myb-like DNA-binding domain 567 610 IPR001005 -
Rops7g02349 883 Pfam Myb-like DNA-binding domain 620 661 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02349 Rops-Chr7 42154932 42161085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02349 224 703 MYB-Related Transcription Factor Family AT3G18100 53.187 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops7g02349 Myb_DNA-bind_6 8.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02349 K09422 - gmx:778073 993.03