Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02344 ATGGGAAGACAACCTCCGCAAACATGTCGGGCGGAAGAGGAGGAGGAGGTGCCGGGTCGTGGAGCTACAGTTTCTGATCAATCAATGTCAACAAGCAGAAGTGTTGGGTCATCATCCAGCCGGAGTGAGCAGACGATGGCTACACCAACTAGTGATAACACTTTTCTGAGATTGAACCATCTTGACATACATGGTGATGATGCTGGATCACAGGGCGCAGTTGCTAGCAAGAAGAAAAAGAGAGGCCAGCGTGCCGTTGGAGGTGGTAAGAGTGGAAGAGGGCTCCGCAAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCAGATGAACTTGTGGCTGAATTTGGTGATCCAAGCAATAGTGTTTCATCCCCTGATCAGAAACAATATGATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCGTGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTATTCCTTGTACTAGTCTAAATGATATTGAAGAACTAAAGACGGAGCGTCTTGGGCTGAGGAATAGAATTGAAAAGAAAGCTGCCTATTTGCAAGAACTAGAAGAGCAATACATAGGTCTTCAGAAACTTATACAACGAAACGAGCAATTATATAGCTCAGGAAATGCTCCCTTTGGAGGTGTGTCTTTGCCTTTTATTCTGGTACAGACACGCCCCCATGCAACTGTTGAAGAGAAAAAAATTTCACTCCATGTAGAGATAGCTGGAAAGATCAACAAAATTATCAGAGAAACCGATCTTAGAGAGCTTGGGCAGTTAGAGCAAGATCTTGTTTTTGGGGATGCCGGAGCCAAAGACGTTGTTAGCTTTTTAAGAAAAAACCAGAATACAACTCCCGAATACAAGTTGCGTTTGTTGATGATTTATGCATCTGTCTATCCTGAAAAGTTTGAGGGTGATAAAGCTACAAAGCTAATGCAGTTGGCAAAACTATCACGTGATGACATGAAAGTTATCAGTAATATGCAACTGTTGGCGGGATCATCAAACAAAAAGTCATCTTCTGGTGGTTTCTCACGGAAGTTCAATAACCAGAAGACAAAGCAAGCAACACGCAAAGATCGTACTGAAGAGGAGGAAGAAACGTGGCAATTATTTCGATTTTATCCTGTGATAGAGGAGTGGCAAATATCCACGGGCTCTCCTATGAAGGCAGCAAGAGGGTCTTGGTACGTGAAGAGAAAGAGGCGTGCATGGCGCCATAAGGGAGGTAAGCAGGGCTGGTCCAACGTTGGTGGCAATGGTCATCGACCAGAATGTAATCTTAGGGTGATCACAGCCCCATCAAACACGGGAGAATGCTCGGAGAAGAGATCCCATAGTAGCAAGCTTGTATGCAAGAACAAGGAGATTTCTTTCAACATGATGAAGCATCCAACCTTTTCAACGTTTTGCCATGTTTCTCTCATACGAAAGCCATGGGGTACTGCTGATGTTACACGAGTTTAG 1527 0.4348 MGRQPPQTCRAEEEEEVPGRGATVSDQSMSTSRSVGSSSSRSEQTMATPTSDNTFLRLNHLDIHGDDAGSQGAVASKKKKRGQRAVGGGKSGRGLRKFSMKVCEKVESKGRTTYNEVADELVAEFGDPSNSVSSPDQKQYDEKNIRRRVYDALNVLVAMDIISKDKKEIQWKGIPCTSLNDIEELKTERLGLRNRIEKKAAYLQELEEQYIGLQKLIQRNEQLYSSGNAPFGGVSLPFILVQTRPHATVEEKKISLHVEIAGKINKIIRETDLRELGQLEQDLVFGDAGAKDVVSFLRKNQNTTPEYKLRLLMIYASVYPEKFEGDKATKLMQLAKLSRDDMKVISNMQLLAGSSNKKSSSGGFSRKFNNQKTKQATRKDRTEEEEETWQLFRFYPVIEEWQISTGSPMKAARGSWYVKRKRRAWRHKGGKQGWSNVGGNGHRPECNLRVITAPSNTGECSEKRSHSSKLVCKNKEISFNMMKHPTFSTFCHVSLIRKPWGTADVTRV* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02344 508 SMART DP_2 180 272 IPR014889 -
Rops7g02344 508 SUPERFAMILY E2F-DP heterodimerization region 179 250 IPR037241 -
Rops7g02344 508 Gene3D - 87 178 IPR036388 -
Rops7g02344 508 Coils Coil 189 223 - -
Rops7g02344 508 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Rops7g02344 508 MobiDBLite consensus disorder prediction 1 93 - -
Rops7g02344 508 MobiDBLite consensus disorder prediction 23 57 - -
Rops7g02344 508 MobiDBLite consensus disorder prediction 354 384 - -
Rops7g02344 508 CDD DP_DD 178 250 IPR014889 -
Rops7g02344 508 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Rops7g02344 508 MobiDBLite consensus disorder prediction 354 371 - -
Rops7g02344 508 SUPERFAMILY Sec1/munc18-like (SM) proteins 245 400 IPR036045 -
Rops7g02344 508 FunFam Transcription factor-like protein DPB 85 178 - -
Rops7g02344 508 Gene3D - 272 394 - -
Rops7g02344 508 PANTHER TRANSCRIPTION FACTOR DP 22 252 IPR015648 GO:0005667|GO:0051726
Rops7g02344 508 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Rops7g02344 508 Gene3D Transcription factor DP 179 258 IPR038168 -
Rops7g02344 508 Pfam Sec1 family 244 399 IPR001619 GO:0016192
Rops7g02344 508 Pfam Transcription factor DP 181 250 IPR014889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02344 Rops-Chr7 42006160 42016997 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02344 79 250 E2F-DP Transcription Factor Family AT5G02470 48.555 1.77e-52 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Rops7g02344 Sec1 3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02344 K04683 - gmx:100781272 422.55