Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02335 ATGTCTATGCAGCAACACAATTCTGATATCAACGGTGTATCAGGGTCAGGATCTTGCCTTTATGATCTCTTCTGCACTGAAACACCTTGTTTGAATTCTCAAAGTCAAAGGGACAAATGGATGTTTTATGGACCCCAGGAAAGGCTAGACAATCTGATGCGTCAAGCTGGGAACAAGTTCTGTGCTGATTGTGGATCGTCAGAGCCAAAATGGGTGTCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGCTCTGGAATACATAGAAGCCTAGGAGTCCATATATCAAAGGTACTATCACTGAAGCTTGATGAATGGACAGATGAACAAGTTGATGCATTGGTGAAGTTGGGTGGAAATACAGTAATCAATAAGAAATATGAAGCTTGCCTGCCAAGTAACATAAATAAACCAAAACCACATTCTTCCATTGAGGAGCGCTCTGATTTTATTAGGAGAAAATATGAGCTGCTACAGTTTTTGGATTCCGAGGAGAATTTGTCTTGTCCCTTTGTACCATCTCAAGGAAGAAACTCATCATCCTCTCAGAGCAGTTCCTCATACAACAGTTGTCCACTAGAAAAGAAACATTATGATAAACAACCAACTAAAAATCGTATTGGATTATCATTTCGAAACAGCTGGGGAAGAAAAGATTCTGAGCATAGGAGTACAAAGAAGAGCAACTCTTTGGCAGGTATGATTGAATTTGTTGGATTGATTAAGGTTAATGTGGTTAAGGGCACAAATCTTGCTGTCCGGGATGTAGTGACTAGTGACCCTTATGTCATTCTTTCTCTGGGTCACCAATCAGTGAAGACACGGGTCATAAAGAACAATTTAAATCCAGTTTGGAATGAAAGCCTAATGTTGTCAATACCTGAGAGCATTCCTCCTCTTAAAGTGGTTGTGTATGACAAGGATACTTTCTCAACTGATGATTTTATGGGTGAGGCTGAAATAGACATTCAACCCCTAGTTTCAGCCGCAAAGGCATGTGAGAAATCTACAATCAATGAGTCCATGCAGCTTGGAAAATGGGTAGCAAGTAGTGACAACACTCTTGTTAAAGATGGTATCATCACACTTGAAGAAGGGAAGGTAAGACAAGACATCTCACTGAGGCTACAGAAAGTTGAGAGAGGTGTGCTGGAGATTGAGCTTGAATGTGTTCCTCTTACTCAATAG 1188 0.4032 MSMQQHNSDINGVSGSGSCLYDLFCTETPCLNSQSQRDKWMFYGPQERLDNLMRQAGNKFCADCGSSEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALVKLGGNTVINKKYEACLPSNINKPKPHSSIEERSDFIRRKYELLQFLDSEENLSCPFVPSQGRNSSSSQSSSSYNSCPLEKKHYDKQPTKNRIGLSFRNSWGRKDSEHRSTKKSNSLAGMIEFVGLIKVNVVKGTNLAVRDVVTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPESIPPLKVVVYDKDTFSTDDFMGEAEIDIQPLVSAAKACEKSTINESMQLGKWVASSDNTLVKDGIITLEEGKVRQDISLRLQKVERGVLEIELECVPLTQ* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02335 395 MobiDBLite consensus disorder prediction 172 192 - -
Rops7g02335 395 Pfam Putative GTPase activating protein for Arf 47 162 IPR001164 GO:0005096
Rops7g02335 395 CDD C2_ArfGAP 238 382 - -
Rops7g02335 395 Gene3D C2 domain 238 393 IPR035892 -
Rops7g02335 395 ProSiteProfiles C2 domain profile. 218 337 IPR000008 -
Rops7g02335 395 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 43 395 IPR044518 GO:0005096|GO:0005543
Rops7g02335 395 SUPERFAMILY ArfGap/RecO-like zinc finger 46 161 IPR037278 -
Rops7g02335 395 SMART arf_gap_3 47 168 IPR001164 GO:0005096
Rops7g02335 395 FunFam stromal membrane-associated protein 1 isoform X1 32 166 - -
Rops7g02335 395 CDD ArfGap 49 155 - -
Rops7g02335 395 ProSiteProfiles ARF GTPase-activating proteins domain profile. 46 168 IPR001164 GO:0005096
Rops7g02335 395 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 237 395 - -
Rops7g02335 395 Gene3D Arf GTPase activating protein 31 168 IPR038508 -
Rops7g02335 395 SMART C2_3c 240 335 IPR000008 -
Rops7g02335 395 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 238 331 IPR035892 -
Rops7g02335 395 PRINTS HIV Rev interacting protein signature 77 94 IPR001164 GO:0005096
Rops7g02335 395 PRINTS HIV Rev interacting protein signature 98 119 IPR001164 GO:0005096
Rops7g02335 395 PRINTS HIV Rev interacting protein signature 58 77 IPR001164 GO:0005096
Rops7g02335 395 MobiDBLite consensus disorder prediction 172 199 - -
Rops7g02335 395 Pfam C2 domain 240 331 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02335 Rops-Chr7 41682711 41695581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02335 46 395 C2H2 Transcription Factor Family AT4G05330 47.429 2.85e-116 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02335 K12486 - gmx:100799376 665.225