Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02327 ATGTCCGGTGACGATCCCTTCTCGGGGCACAAGCTCTGCGGTTTCCTCTGTGCGGTTCTCACAGTTACCCCTTCAGACAACGACGTTTGTTTCAATGATCGCTGCGAGATCTTCAACGGCGGGTTCCGTACCCAAAACGGCGTCGTTTTGTCTGCTGTGGAATGCGGTGACACCGCGAGTGCGAAGAAGAGGACGAGGAAGATTGGGGCAGTGAATGGGAGCATAAGCGTGGTTCATCAGCTTCACGCTTTGGTGAGTCGCAACTGCATGAAGATTGATGCATGCGTGGTGCGTGTTGAGGTTCCTAGGGTTGTGGTGCTTGTTGATGTTTACCTCACTATTGAGTTGTGGAGTGGTTGGCAGTTTCCGAGATCGGGTTCCGTTGCTGGTGCTATTTTGCGACATTTGAGCTGCGATTGGGATGAGAGAAGTTCGATGCTTTCTTATCCAGACTATTGTAGTAAGACTCATGGACCAAATGAGACCACTTGGAACCTTTCTGATTGTCATGTACTTCGTTGCAAGCTCCATTCCCGTGTGAGTGGTTCTTCAAGGAAAAGGCTATTTGAACTTCATGAAATTTTTAAGACGGTACCTGGTGTAGGAAAACAACAGAGGTTTATTAGTTCCAAGATAATACCTCTGGATACCACTTGCAGATCTGGGATATGGGAGATATCTGATGATATTTTAACTAAAATTCTAGCTTCACTGGGCCCGATGGACCTCAGCAGGGTTTCTGCGACGTGTCATCATCTAAGATCCTTGGCTGCTTCAATAACGCCATGTACTAAGTTAAATCTGTATCCTCATCAGCGGGCAGCGGTGGAGTGGATGTTGCATCGTGAGCGAAATGCTGTACTTTTGCCACATCCTTTATATGTAGCTCTCTCAACTGATGATGGCTTTAGTTTCCATGTAAATACTGTATCTGGTGAAATAGTCACCGGGGAAGCTCCCACCATCAAAGATTTTCGTGGAGGAATGTTTTGTGATGAGCCTGGCTTGGGCAAGATTGTAACAGCTCTTTCTCTTATTGTGAAGACGCAAGGTACATTGGCAGACCCACCAGATGGGGCACAAGTAGTCTGGTGTCAACATAATGGTAACCAGAAATGTGGCTATTATGAGATCGGTGGTAATAACATCACTGGTTGTACTATCTCGGGGAAGAGGGATGTGTGCCAAGATACTGGTAGAAATACTGAGAACCATGATCACTCCTCCAAAAGAGCCAGATTGATGGATCCTTGTCAGAAAATCACTACACTTCCTGATTCATGTTCTGGAGAAGAAAACAAATCACCTGTAGATGCTTACTTTGAGGAATCTATGCCTGCAAGTCGGTGCACTAGGAGCTTGAGTAGCATAAAGAAAAACCTTCATTTCACATATGAAGAAGAAGCTATGCTTTTCAAAGAAAGAAAAGTTGGTGAAAGATCAATCCAAACAAAGCATGCATCAGATGTTGCATCCCATGCATCGCAAAACAAGCTAGTTGATACTTCATATGGACGTGGACAAAATTATGAGAAGCCTGGGAAGAAGCCTATAGTTGATTCTTTGGAATACAATGATACATGGATTCAGTGTGATGCTTGTCACAAGTGGCGAAAGCTTTCCGACAATAGTATGGCTAATTCTAGTGCAGCTTGGTTTTGTAGTATGAACACTGACCCTTTACATCAGAGTTGTAGTGTCCCTGAACAATATATTCAGAATAGCTGTAAGATAACTTACTTGCCAGGATTTCACTTGAAAGGAACTCTTGGGGGTGGGAAACAAAATATTTCATTTTTTATTAGTGTGCTTAAGGAGCACTACTCTTTGATAAATTATCAGACAAAGAAAGCCCTGACTTGGTTGGCTAAAATTTCAACAGACAAGCTGGCAGTAATGGAAACAAATGGCATACGGGGTCCTATTTTAAACAATTGCACTGTGTCTAATGGACATTTGAATCCATTCCACAAAATATTTCAAGCATTTGGCCTCATAAAGAGAGTAGAGAAAGGTGTATGCAAGTGGTACTACCCACAAAATCTTAACGATTTAACTTTTGATGTGGCTGCCCTTGGCATGGCTCTTCGTGAGCCATTAGATTTTGTGAGGCTATACTTGTCAAGAGCAACCCTGGTAGTTGTTCCAGCAAACTTGGTTGACCATTGGAAAACACAAATAGAAAAGCATGTCAGGCCTGGTCAATTGCGGGTTTATGTTTGGACTGATCATCGGAAGCCATCTGCACACTGTCTTGCTTGGGATTATGATGTTGTCATCACTACATTTAGTCGTTTGAGTGCAGAGTGGGGCCCACATAAGAGGAGCATTCTGATGCAAGTGCATTGGTTTAGAATAATTTTAGATGAAGGGCATACTCTTGGTTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGGTGGCATCGAATCGATGGATACTAACAGGAACTCCAACACCAAACACTCCAAACAGCCAACTTCCACATCTACAACCTTTGCTAAGGTTCCTTCATGAAGAATCTTATGGACTGAATCAAAAGTCATGGGAAGCCGGTGTGCTTAGACCATTTGAGGCAGAGATGGAGGAAGGTCGGTCTCGTCTGTTGCATTTACTTCACAAATGTACAATCAGTGCAAGAAAGATAGATCTGCAAAGTATTCCACCATGCATCAAGAAAGTTGTTTTTCTAGATTTTAATGAGGAGCATGCCAGAAGTTACAATGAATTGGTACTCACAGTTCGGCGTAATATATTGACGGCTGATTGGAACGATCCTTCACATGTTGAGAGTCTACTAAATCCAAAACAGTGGAAATTTCGTAGTGCAACTATAAAAAATGTTAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGATATGTTGGTACAAAGTGGCCTAGATCCTACTTCAGGAGAGTATGCCTCCATAAGATATAATCTCCTGTATGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCTCTCATTACACCTTGTCGACATCTGTTGTGCCTTGATTGCGTTTCGATAGACAGTACAAAGTGTACATATCCTGGCTGCAGTAACTTGTACGAGATGCAAAGTCCTGATACCATGGCAAGACCAGAAAATCCTAACCCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCTTCATACAAGCAGGATAAATGGGATCCTGATTGGCAATCAACATCTAGTAGTAAAGTCTCCTATCTAATTCAGAGGTTGAAAGCTTTGCAAGGAACCAATGAAGAGATGAGTTTCCATACAGATGATAGCAATGATGAGATGCTTACTGAGAATAGTTTCCCTTTGCATATGAGAGATGCCAAAGCATCATTCCAGGAATGTTCTATAAGTAGCAGCAAGACCAATTTGATCCCTGAAAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTGTTAATGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCAAGCAACAAGAAGAAGTCATTAGCCATGTTCCAGCATGATTCAAGTTGCATGGCACTTCTTATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGCTTTGTTACGCATGTATTTTTAATGGAGCCAATTTGGGACAAAAGTATGGAGGAGCAAGTAATTAGTCGTGCCCATCGGATGGGTGCTTCTCTTCCTATTCATGTGGAAACATTAGCAATGTGTGGTACAATTGAAGAGCAAATGGTAGAATTTTTACAGGATGCTGATAAAAGTAGAAGATTTGCAAGTAAAGATGTTGCCAAATCTGAAGGTGATAGTGGGGGACGAGGATATCGATCATTGCATGATTTTGCTGAAAGCAGTTATCTACAGAAACTTAGATTTGTGTATACTAATTCGGAAACTCTAGAAGGTGTTTGA 3975 0.4211 MSGDDPFSGHKLCGFLCAVLTVTPSDNDVCFNDRCEIFNGGFRTQNGVVLSAVECGDTASAKKRTRKIGAVNGSISVVHQLHALVSRNCMKIDACVVRVEVPRVVVLVDVYLTIELWSGWQFPRSGSVAGAILRHLSCDWDERSSMLSYPDYCSKTHGPNETTWNLSDCHVLRCKLHSRVSGSSRKRLFELHEIFKTVPGVGKQQRFISSKIIPLDTTCRSGIWEISDDILTKILASLGPMDLSRVSATCHHLRSLAASITPCTKLNLYPHQRAAVEWMLHRERNAVLLPHPLYVALSTDDGFSFHVNTVSGEIVTGEAPTIKDFRGGMFCDEPGLGKIVTALSLIVKTQGTLADPPDGAQVVWCQHNGNQKCGYYEIGGNNITGCTISGKRDVCQDTGRNTENHDHSSKRARLMDPCQKITTLPDSCSGEENKSPVDAYFEESMPASRCTRSLSSIKKNLHFTYEEEAMLFKERKVGERSIQTKHASDVASHASQNKLVDTSYGRGQNYEKPGKKPIVDSLEYNDTWIQCDACHKWRKLSDNSMANSSAAWFCSMNTDPLHQSCSVPEQYIQNSCKITYLPGFHLKGTLGGGKQNISFFISVLKEHYSLINYQTKKALTWLAKISTDKLAVMETNGIRGPILNNCTVSNGHLNPFHKIFQAFGLIKRVEKGVCKWYYPQNLNDLTFDVAALGMALREPLDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRVYVWTDHRKPSAHCLAWDYDVVITTFSRLSAEWGPHKRSILMQVHWFRIILDEGHTLGSSLNLTNKLQMAISLVASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEESYGLNQKSWEAGVLRPFEAEMEEGRSRLLHLLHKCTISARKIDLQSIPPCIKKVVFLDFNEEHARSYNELVLTVRRNILTADWNDPSHVESLLNPKQWKFRSATIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPTSGEYASIRYNLLYGGHCVRCKEWCRLPLITPCRHLLCLDCVSIDSTKCTYPGCSNLYEMQSPDTMARPENPNPKWPVPKDLIELQPSYKQDKWDPDWQSTSSSKVSYLIQRLKALQGTNEEMSFHTDDSNDEMLTENSFPLHMRDAKASFQECSISSSKTNLIPEKVLIFSQFLEHIHVIEQQLTVNGIKYTGMYSPMHSSNKKKSLAMFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDKSMEEQVISRAHRMGASLPIHVETLAMCGTIEEQMVEFLQDADKSRRFASKDVAKSEGDSGGRGYRSLHDFAESSYLQKLRFVYTNSETLEGV* 1325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02327 1324 Gene3D - 1059 1309 IPR027417 -
Rops7g02327 1324 ProSiteProfiles Zinc finger CW-type profile. 522 573 IPR011124 GO:0008270
Rops7g02327 1324 MobiDBLite consensus disorder prediction 483 516 - -
Rops7g02327 1324 Gene3D - 521 575 - -
Rops7g02327 1324 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 675 840 IPR014001 -
Rops7g02327 1324 SUPERFAMILY F-box domain 218 259 IPR036047 GO:0005515
Rops7g02327 1324 SMART ultradead3 264 851 IPR014001 -
Rops7g02327 1324 Pfam Helicase conserved C-terminal domain 1145 1246 IPR001650 -
Rops7g02327 1324 CDD F-box_SF 225 257 - -
Rops7g02327 1324 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1140 1285 IPR001650 -
Rops7g02327 1324 Pfam SNF2-related domain 271 938 IPR000330 GO:0005524|GO:0140658
Rops7g02327 1324 Gene3D - 690 884 IPR038718 -
Rops7g02327 1324 SMART fbox_2 226 266 IPR001810 GO:0005515
Rops7g02327 1324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 708 866 IPR027417 -
Rops7g02327 1324 CDD SF2_C_SNF 1151 1256 - -
Rops7g02327 1324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 782 1289 IPR027417 -
Rops7g02327 1324 ProSitePatterns Zinc finger RING-type signature. 1018 1027 IPR017907 -
Rops7g02327 1324 SMART helicmild6 1164 1246 IPR001650 -
Rops7g02327 1324 Pfam CW-type Zinc Finger 527 570 IPR011124 GO:0008270
Rops7g02327 1324 MobiDBLite consensus disorder prediction 485 504 - -
Rops7g02327 1324 Pfam F-box domain 226 261 IPR001810 GO:0005515
Rops7g02327 1324 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 105 1279 - -
Rops7g02327 1324 CDD DEXDc_SHPRH-like 704 881 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02327 Rops-Chr7 41409599 41418797 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02327 710 1266 RAD5 or RAD16-like Gene Family AT5G22750 25.628 2.65e-42 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops7g02327 SNF2_N 1.8e-95 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02327 - - gmx:100803102 2193.31