Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02284 ATGGACGAAGCTTTGGAATGTGAAAAAATACCTAAATACAGAGATATTAGACGCTATTTTTGCCAATACTGTGGAATCTACAGATCCAAAAAAACCCTCATCACCTCTCACATCAATTCACACCACAAGGAGGAGGAGGAGGAAAAAGCAAGAGTTGAAGAAAAAGATTCTGAAGCAGAGTGTGAAAAATCCAAAACTTGTGAGGAATGTGGTGCTAGTTTCAAGAAACATGCCTACTTGTTGCAGCACATGCAAAGTCATTCACTTGAGAGGCCATTTGTATGTACTGTCAATGATTGTCAGGTAAGTTACAGAAGAAAGGACCACTTGACTCGTCACCTGTTACAACATCAAGGGAAAACTTTTAAATGTCCTATTGAGAATTGTAACCTTGACTTCTCTTTACAAAGCAATCTGAAAAGACATGTCAATGAGTTTCATGATGACAATTCTACCTCTACTACTTGTGTTGAAAGTCAGAAGCAGTATGTGTGTCCAGAAATTGGCTGTGGAAAGGTTTTCAGATTTGCATCAAGGCTAAGAAAGCATGAAGATTCTCATGTTAAGCTGGAGTCAGTAGATGTAGTGTGCTTAGAGCCTGGTTGCATGAAACATTTCACCAATGCCCACACACATGAATCTAGCAGTTCATCAGAGACCTTTAAATGTGAATTTAAGGGTTGTGACTGCACATTCTCAAGTAAATCTAATCTTCACAAGCATGAGAAGGCTGTGCACTTCAAAGAAAAGCCTTTTGTGTGTGGGTTTGATGGTTGTGGCATGAGATTTGCTTACAAACATGTGAGAGATAACCATGAAAAAACTGGGAAACATGTTTTTACCCTTGGGGATTTTGAAGAAGCTGATGAAGAATTCAGGTCAAGGCCCAGGGGAGGGAAGAAGAGAAAGTATCCTACTGTTGAAATGTTAGTGAGGAAGAGAGTTACCCCACCAAGTCAATTAGAGAACTGGTTACTTGTGCACGATAGTGAGTAA 996 0.3966 MDEALECEKIPKYRDIRRYFCQYCGIYRSKKTLITSHINSHHKEEEEEKARVEEKDSEAECEKSKTCEECGASFKKHAYLLQHMQSHSLERPFVCTVNDCQVSYRRKDHLTRHLLQHQGKTFKCPIENCNLDFSLQSNLKRHVNEFHDDNSTSTTCVESQKQYVCPEIGCGKVFRFASRLRKHEDSHVKLESVDVVCLEPGCMKHFTNAHTHESSSSSETFKCEFKGCDCTFSSKSNLHKHEKAVHFKEKPFVCGFDGCGMRFAYKHVRDNHEKTGKHVFTLGDFEEADEEFRSRPRGGKKRKYPTVEMLVRKRVTPPSQLENWLLVHDSE* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02284 331 ProSitePatterns Zinc finger C2H2 type domain signature. 165 187 IPR013087 -
Rops7g02284 331 SUPERFAMILY beta-beta-alpha zinc fingers 65 117 IPR036236 -
Rops7g02284 331 SMART c2h2final6 163 187 IPR013087 -
Rops7g02284 331 SMART c2h2final6 93 117 IPR013087 -
Rops7g02284 331 SMART c2h2final6 65 87 IPR013087 -
Rops7g02284 331 SMART c2h2final6 19 41 IPR013087 -
Rops7g02284 331 SMART c2h2final6 221 246 IPR013087 -
Rops7g02284 331 SMART c2h2final6 252 278 IPR013087 -
Rops7g02284 331 SMART c2h2final6 122 147 IPR013087 -
Rops7g02284 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 122 IPR013087 -
Rops7g02284 331 PANTHER ZINC FINGER PROTEIN 211 321 - -
Rops7g02284 331 Pfam Zinc finger, C2H2 type 66 87 IPR013087 -
Rops7g02284 331 Pfam Zinc finger, C2H2 type 93 117 IPR013087 -
Rops7g02284 331 Pfam Zinc finger, C2H2 type 221 246 IPR013087 -
Rops7g02284 331 Pfam Zinc finger, C2H2 type 122 147 IPR013087 -
Rops7g02284 331 Pfam Zinc finger, C2H2 type 163 187 IPR013087 -
Rops7g02284 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Rops7g02284 331 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Rops7g02284 331 ProSitePatterns Zinc finger C2H2 type domain signature. 254 278 IPR013087 -
Rops7g02284 331 Gene3D Classic Zinc Finger 159 187 - -
Rops7g02284 331 Coils Coil 42 62 - -
Rops7g02284 331 Gene3D Classic Zinc Finger 3 93 - -
Rops7g02284 331 ProSitePatterns Zinc finger C2H2 type domain signature. 223 246 IPR013087 -
Rops7g02284 331 SUPERFAMILY beta-beta-alpha zinc fingers 120 148 IPR036236 -
Rops7g02284 331 ProSitePatterns Zinc finger C2H2 type domain signature. 95 117 IPR013087 -
Rops7g02284 331 Gene3D Classic Zinc Finger 207 249 - -
Rops7g02284 331 Gene3D Classic Zinc Finger 120 148 - -
Rops7g02284 331 Gene3D Classic Zinc Finger 94 119 - -
Rops7g02284 331 SUPERFAMILY beta-beta-alpha zinc fingers 217 259 IPR036236 -
Rops7g02284 331 SUPERFAMILY beta-beta-alpha zinc fingers 160 187 IPR036236 -
Rops7g02284 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 221 251 IPR013087 -
Rops7g02284 331 ProSitePatterns Zinc finger C2H2 type domain signature. 124 147 IPR013087 -
Rops7g02284 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 192 IPR013087 -
Rops7g02284 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Rops7g02284 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 152 IPR013087 -
Rops7g02284 331 Gene3D Classic Zinc Finger 250 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02284 Rops-Chr7 40429221 40430421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02284 89 281 C2H2 Transcription Factor Family AT1G72050 43.116 2.69e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops7g02284 zf-C2H2 0.0028 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02284 K09191 - gmx:100801812 533.872