Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02274 ATGTCTCCACACACCGATAAGTATGAAGAAGATAACCACGACAACGATGAAGGTCTCAACGAAGACATGGACGCACTTGCACGTGCCTGCATGATCGCCACTCCTAACGAAGCCGCCGGTGAAATTCCAGTGGAGGAGGACCCGCTATTGGCCAACGGAGACACCGTCGTCCCTGTCGCCACCAACGACTCTAACTCCGATGATGAACGGAGTGATCTTGACACTCTCAAGATAGTGCAGAGTCTCTATGAGCCTTCGGTGAAAACAACGACGACTATGATTAAAGATTTCGACGATGAAGATGACTTTGAGACTGTTCGCGCCATTTTCAAACGGTTTTCCAACTACGATCAAGGTACCAATGAAGGTGGAATGAAAACATTGAAGGGGCACCAGGCCTCAAGCTCCCTCTCTTCCAAATCAGATGCTGCTGGTGATTTATGTCCTGTCTCTGAACATCCTGATACCACCAATTTGGTGATTGGTGACATCAAAATGCAGCCTAGTGATTTTGTTGACAGTTATGAACCTGATGCTGGCGAATCATCCAAATTACCTCATATTGAAATGCAGCATAGTAGTTTTGTTGACAGTTATGAACCTTATGCCGGCGAGTCATCCGAATTACCACCGAAAAGATCAAACTTTCCACCGGCAGCTCGTTCTTTAGTTGATGCCATCAAGAAGAATAGGGCTCTCCAGAAATTTCTTAGAAGTAAGTTGATCGTGCTTGAAGCAAAAATTGAGGAAAGCAAACAGATAAGGAACAAAGTTAAAATCCTTAGGGACTTCCAGATTTCATGTAGTAGAAGAACAGGGAGTGCTTTATCATTAAAAAAAGATCCTCGTGTTCAGTTAATATCAGCAAGAAAGAGTCCCACTCCAAATAACTCAAAGAGCCACAATAAAAAGGTATCTCCAATGTGTTATGGCCCACCCGAGAATTCTCGTGTTGCTAATTATAAGATGGTACTTGAAAGATTTCCACTTTCAATAGATCGGAAAAAATGGTCTAATGAGGAAAGGGAAAACCTTTTGAAGGGAATTAAACAACAATTCCAAGAAATGGTGCTTCAAATTTCAGTAGATAGAGTAAGTTCGGAGCGCTCATCTGGAGCTGCAAATGACATGGATTGCATAATTGCATCTGTTAAAGATCTTGAAGTTACACCAGAGAGGATTAGAGAATTTTTACCTAAAGTTAATTGGGATCGGTTGGCTTCCATGTATGTTGCTGGTCGTACTGGCGCTGAGTGTGAATCAAGGTGGTTGAATTGTGAAGATCCTTTGATCAACCATGGCCCATGGACTGGTGAAGAGGATAGGTCTCTTATGGTTATTGTCCAAGAAAGAGGCATTAGGAACTGGTTTGATATTGCTGTGTCATTGGCTACAAATAGGACTCCATTTCAATGCTTGGCTCGATACCAAAGGAGCTTAAATCCTTCAATGTTAAATAGTGAATGGACTCCGGAAGAAGATGCTCAACTTAGTTCTGCTGTTGCATTTTTAGGTGAGAGCGACTGGCAGTCTGTGGCTTCTGTTTTAGAACGGCGGACAGGAACCCAGTGCTCAAATAGATGGAAAAAATCGCTTTGTCCTGTGAGGAAAGGGAGCTTTACTAGAGAGGAGGATGTACGCTTAACAGTAGCAGTCATGCTTTTTGGACGGAAATGGAATCAAATAGCTAAGTTTGTTCCTGGCCGGATCCAATCTCAATGTAGGGAAAGATACCTTAATAGTTTGGATCCTTCTTTGAAATGGGGAGGATGGACTGAGGAAGAGGACTCAAGATTAGAAGCTGCAATTGCGAAGCATGGATATTGCTGGTCTAAGGTGGCTGAAGAAGTGCCTCCCCGTACCGATTCTCAATGCCGAAAGAGATGGAAGGTGTTATATCCTGACCAAGTTCCTTTGCTTCAAGAAGCAAGAAAGAGACAAAAGTCTCTAATTGCTAGTAACTTCGTTGATCGAGAATTTGAACGCCCAGCCCTTACCCTGAATGACTTTCTTCCTGTACAAATGTTAGGTTCACAATCTGATGCTGGTGGTGTTAGTCTCCAAAGGAAGCAGAAAGGCAAATCAAGCAATGTTTCCATGAAAACGAGGTCTAAAAAACTTGCAAAAGAGGCTGAAGTTGGTGACGAGGAAGTGCAAGATACTGTACATAGTGATGAGGTCAACATCGGTGGGGGAGGTGTTCCATTCAGTGCATTCAGCAACATTCCCAAGACAATGAGATCCAAAAGACATTCAAAAAAGGCTCAAATTCATCTCAAGAAAGTAGAGGATATAGCTTGTAGTGACAAGGTGAAGACTAGTACCGAGAGTTCGGAAAGTCGTGATTGGGAAATGACTCTTGCATCCTTTTTATACACAAAATCAAAGAAGAGACAATCTGAATGTACCAAAAATGTGAGTCAGGATTCCTCTTCCTCTAGGACAACAGTTGTATCTCAGCAAGTTGAAAATCAAATCCAGTCTGGTGAGCATGATGGGTTGTCTCTGTCACATGGTACTGGTGGAACTACAGATTTGCCCATGCAGCAGAATGATGCTTCTCAAGGACATGTGGGAAAACCAGAAGATGGAGATGCAGTTAGAAAACCAGAGGATGCAAATAATTTGACTGGTGATGATGATGATGATATGACTCTTGCATGCCTTGTGGGAAACAAATCACAGAAAGACTGTCAAGCTGCTAAAGGACGTGGTGCAAGCTCTTCCAAATTGAAAAAGAGATCTGTGTTACTTCATGAAGTGGATTGTGGAAACAAGCCAACCATCATAGCTGATAGTAGTGGACCATCAATTTTCAAAACTGTTGAAATGGAGACTGCTTTGCATGGTGGTGAGGCTGAACCCACAAACACCAATGAGGAAGATAAAGATGACCTGCTCGTATCCTTCTTGCAAAATAAGACAAAGAGACAGGGAAGACGAGCCAATATTCATAAAGGAAAATGTGTAGCATGCTACAATCAATCACTTAGTAGAAAGAGGCATTACTCCTTATGA 3018 0.4251 MSPHTDKYEEDNHDNDEGLNEDMDALARACMIATPNEAAGEIPVEEDPLLANGDTVVPVATNDSNSDDERSDLDTLKIVQSLYEPSVKTTTTMIKDFDDEDDFETVRAIFKRFSNYDQGTNEGGMKTLKGHQASSSLSSKSDAAGDLCPVSEHPDTTNLVIGDIKMQPSDFVDSYEPDAGESSKLPHIEMQHSSFVDSYEPYAGESSELPPKRSNFPPAARSLVDAIKKNRALQKFLRSKLIVLEAKIEESKQIRNKVKILRDFQISCSRRTGSALSLKKDPRVQLISARKSPTPNNSKSHNKKVSPMCYGPPENSRVANYKMVLERFPLSIDRKKWSNEERENLLKGIKQQFQEMVLQISVDRVSSERSSGAANDMDCIIASVKDLEVTPERIREFLPKVNWDRLASMYVAGRTGAECESRWLNCEDPLINHGPWTGEEDRSLMVIVQERGIRNWFDIAVSLATNRTPFQCLARYQRSLNPSMLNSEWTPEEDAQLSSAVAFLGESDWQSVASVLERRTGTQCSNRWKKSLCPVRKGSFTREEDVRLTVAVMLFGRKWNQIAKFVPGRIQSQCRERYLNSLDPSLKWGGWTEEEDSRLEAAIAKHGYCWSKVAEEVPPRTDSQCRKRWKVLYPDQVPLLQEARKRQKSLIASNFVDREFERPALTLNDFLPVQMLGSQSDAGGVSLQRKQKGKSSNVSMKTRSKKLAKEAEVGDEEVQDTVHSDEVNIGGGGVPFSAFSNIPKTMRSKRHSKKAQIHLKKVEDIACSDKVKTSTESSESRDWEMTLASFLYTKSKKRQSECTKNVSQDSSSSRTTVVSQQVENQIQSGEHDGLSLSHGTGGTTDLPMQQNDASQGHVGKPEDGDAVRKPEDANNLTGDDDDDMTLACLVGNKSQKDCQAAKGRGASSSKLKKRSVLLHEVDCGNKPTIIADSSGPSIFKTVEMETALHGGEAEPTNTNEEDKDDLLVSFLQNKTKRQGRRANIHKGKCVACYNQSLSRKRHYSL* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02274 1005 SMART sant 587 635 IPR001005 -
Rops7g02274 1005 SMART sant 485 534 IPR001005 -
Rops7g02274 1005 SMART sant 536 584 IPR001005 -
Rops7g02274 1005 SMART sant 432 482 IPR001005 -
Rops7g02274 1005 SMART sant 333 429 IPR001005 -
Rops7g02274 1005 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 428 480 IPR017930 -
Rops7g02274 1005 MobiDBLite consensus disorder prediction 681 702 - -
Rops7g02274 1005 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 583 637 IPR017930 -
Rops7g02274 1005 Pfam Myb-like DNA-binding domain 436 497 - -
Rops7g02274 1005 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 537 582 IPR017930 -
Rops7g02274 1005 MobiDBLite consensus disorder prediction 289 311 - -
Rops7g02274 1005 ProSiteProfiles Myb-like domain profile. 536 582 IPR001005 -
Rops7g02274 1005 Pfam Myb-like DNA-binding domain 537 580 IPR001005 -
Rops7g02274 1005 Pfam Myb-like DNA-binding domain 590 631 IPR001005 -
Rops7g02274 1005 Pfam Myb-like DNA-binding domain 334 425 IPR001005 -
Rops7g02274 1005 CDD SANT 435 480 IPR001005 -
Rops7g02274 1005 MobiDBLite consensus disorder prediction 681 720 - -
Rops7g02274 1005 SUPERFAMILY Homeodomain-like 562 635 IPR009057 -
Rops7g02274 1005 Gene3D - 487 535 - -
Rops7g02274 1005 MobiDBLite consensus disorder prediction 798 882 - -
Rops7g02274 1005 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 481 536 IPR017930 -
Rops7g02274 1005 ProSiteProfiles Myb-like domain profile. 334 425 IPR001005 -
Rops7g02274 1005 Gene3D - 333 429 - -
Rops7g02274 1005 ProSiteProfiles Myb-like domain profile. 583 633 IPR001005 -
Rops7g02274 1005 MobiDBLite consensus disorder prediction 858 875 - -
Rops7g02274 1005 ProSiteProfiles Myb-like domain profile. 481 532 IPR001005 -
Rops7g02274 1005 MobiDBLite consensus disorder prediction 703 720 - -
Rops7g02274 1005 Gene3D - 536 586 - -
Rops7g02274 1005 Gene3D - 587 635 - -
Rops7g02274 1005 Gene3D - 433 484 - -
Rops7g02274 1005 MobiDBLite consensus disorder prediction 804 856 - -
Rops7g02274 1005 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 10 1000 - -
Rops7g02274 1005 SUPERFAMILY Homeodomain-like 434 490 IPR009057 -
Rops7g02274 1005 MobiDBLite consensus disorder prediction 1 21 - -
Rops7g02274 1005 SUPERFAMILY Homeodomain-like 401 437 IPR009057 -
Rops7g02274 1005 CDD SANT 591 632 IPR001005 -
Rops7g02274 1005 CDD SANT 488 532 IPR001005 -
Rops7g02274 1005 SUPERFAMILY Homeodomain-like 484 578 IPR009057 -
Rops7g02274 1005 MobiDBLite consensus disorder prediction 289 304 - -
Rops7g02274 1005 ProSiteProfiles Myb-like domain profile. 428 480 IPR001005 -
Rops7g02274 1005 CDD SANT 539 582 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02274 Rops-Chr7 40136471 40145340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02274 209 687 MYB-Related Transcription Factor Family AT3G18100 55.010 0.0 554
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops7g02274 Myb_DNA-binding 5.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02274 K09422 - gmx:100818474 1088.17