Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02236 ATGTCCACGGCGGTGCCGCCATCTTCCTCCACCGTCACCGGTGTCGGTCTCGGCTACGGCATCGCTATCACTGTCAGCATCCTCGTACTCATCTCCACCATCATGCTCGCTTCCTACGCATGTGTCAGAATCAAAGCCCATGGGCCTCGCAACAGCACCACCTCCTACCCCACTGACAGTGACGTAGAAAACACTGTACATGTAAATAATTCAGTTTGGCCCGGGGGCTTGGAAAAGCCTGTGATTGAGGCATATCCAATGATGATTGTAGGAGAGAGCATGAGATTGCCCAAGCCCAACGAAGGCCCATGCGCGATCTGTTTATCAGAGTATCTTCCCAAAGAGACGATACGGTGCGTTCCGGATTGTCATCATTGTTTCCATGCTGAATGTGTGGATGAGTGGCTTCGGATGAGTGCCACGTGTCCATTGTGTCGAAATTCTCCTGCTCCGTCGCCTGTGCCTACGCCGGCGACAACGCCGCTGTCGGAGCTGGTTCCTTTGGCTTTTAACGCCAGGTGA 522 0.5383 MSTAVPPSSSTVTGVGLGYGIAITVSILVLISTIMLASYACVRIKAHGPRNSTTSYPTDSDVENTVHVNNSVWPGGLEKPVIEAYPMMIVGESMRLPKPNEGPCAICLSEYLPKETIRCVPDCHHCFHAECVDEWLRMSATCPLCRNSPAPSPVPTPATTPLSELVPLAFNAR* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02236 173 CDD RING-H2_EL5-like 104 146 - -
Rops7g02236 173 Pfam Ring finger domain 104 146 IPR001841 -
Rops7g02236 173 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Rops7g02236 173 PANTHER RING-H2 FINGER PROTEIN ATL67 8 169 IPR044289 GO:0016567|GO:0016740
Rops7g02236 173 SMART ring_2 104 145 IPR001841 -
Rops7g02236 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 151 IPR013083 -
Rops7g02236 173 SUPERFAMILY RING/U-box 98 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02236 Rops-Chr7 38448194 38448715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02236 1 173 C3H Transcription Factor Family AT5G07040 57.803 5.05e-63 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02236 - - lja:Lj3g3v0787250.1 247.284