Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02206 ATGAGGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAGATAATGCAAGCAGACGAGGATGTTGGAAAGATAGCACTGGCAGTTCCTGTTTTAGTGTCTAAAGCTCTGGAATTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAACCCTTCAGAGAGGAGCAAAGACCATGAATGCATTGCATTTGAAACATTGCGTCCAAAGCTATAATGTCTTTGACTTTCTGAGAGACATTGTTAGTAGGGTTCCTGATTATGGGCATGGACATGGCCATGCCCATGGCCATTCTGAGGCTGGAGCTGATGGTAGTGCCCTTCCAAAGAGAAGGAAAGCTGCTGGTGATGATTGCAACGACAGTGATGAAGAGGCTAAGAGGAGTAAGATGCTTGAGTTGGGTCACTCTGGCAGTACTGGTAGGGGAAGAGGCCGAGGAAGAGGAAGAGGCCGTGGTCGAGGGGCACGGAATGTAGAAAGAGAGACCATTCATCAGCAGGTTGAATCTGAACCTTGCACCTCTGTTCAAAGTAGCAAAGATGTTCCTAATACAAGTGTGGCAGTAGATAATGGTCCAGAATCCAAGGAGTTGTCAAAGGAGAACATTGCAGTTAATGAGGAAAGTGCTCAATCTCTCCGTAACATTGATCTGAATGCCAACTTAAATGAAAATGAGGACAAAAATGCTAGCACTGCAACTCAGGCCTCATTGTCTGAACCTGCTGAAACAGAGATTAAGCATGAAGAAATTCCAGGCTGGTCCCTTTCTGATGTGGACAAGATGGCCATTGACACTTTGCAGCTTGCAAACCTTGGTAATCAACTAGAAGAGGAGGAGGAAGATTATGATGAAGAAGGGTAA 870 0.4506 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSRVPDYGHGHGHAHGHSEAGADGSALPKRRKAAGDDCNDSDEEAKRSKMLELGHSGSTGRGRGRGRGRGRGRGARNVERETIHQQVESEPCTSVQSSKDVPNTSVAVDNGPESKELSKENIAVNEESAQSLRNIDLNANLNENEDKNASTATQASLSEPAETEIKHEEIPGWSLSDVDKMAIDTLQLANLGNQLEEEEEDYDEEG* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02206 289 SUPERFAMILY Histone-fold 4 96 IPR009072 GO:0046982
Rops7g02206 289 Coils Coil 264 289 - -
Rops7g02206 289 MobiDBLite consensus disorder prediction 155 169 - -
Rops7g02206 289 MobiDBLite consensus disorder prediction 229 260 - -
Rops7g02206 289 FunFam dr1-associated corepressor homolog 1 86 - -
Rops7g02206 289 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 122 - -
Rops7g02206 289 MobiDBLite consensus disorder prediction 92 134 - -
Rops7g02206 289 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Rops7g02206 289 MobiDBLite consensus disorder prediction 229 243 - -
Rops7g02206 289 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Rops7g02206 289 MobiDBLite consensus disorder prediction 170 194 - -
Rops7g02206 289 MobiDBLite consensus disorder prediction 92 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02206 Rops-Chr7 37906173 37912781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02206 1 278 CCAAT-HAP5 Transcription Factor Family AT3G12480 49.828 6.55e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Rops7g02206 CBFD_NFYB_HMF 1.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02206 K21752 - gmx:100810093 427.172