Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02172 ATGGGTTTTGAACCATTGATTTGGTACTGCAAACCAGCAGCAAACAGTGTTTGGGCTAAAGTAGTAGATAGTGCTTTTGGGTCATATACTCCTTGTGCAATTAATACTCTTGTTATCTCCACCTCCAATTTGGTTCTTATGGGCCTATGCTTGTATAGAATATGGCTTATCATTGGTAATGCTAAAGCTCAGAGGTTTTGTTTGAAATCAAATTACTATAATTATATTCTGGCATTGTTGGCTGGTTATTGTGCTGCTCAGCCTTTGTTGAGATTGGTAACTGGAAATTCAGCCTTCAATCTGAATGGGGAGACTAGCTTTGCTCCTTTTGAGATAACAGCTTTGATCATTGAAGCACTTACTTGGTGCTCAATGATAATTCTCATCCTCTTGGAAACCAAGGTTTATATCCGGCAATTTAGGTGGTTGGTGCGGTTTGGTGTTATTTATGTTTTGGTGGGAGACATTGTAATGCTTAACCTTCTTCTGTCAGTGAAAGATTACTGCAGCAGATCTGCTCTGTTTATGTACATTAGCACTGTTATCTGCCAGGTGTTGTTTGGTACCTTACTTCTTGTTTACATTCCTAATTTGGTTACTTACTCTGGCCATATAACAACACAAGCTGAGCTACCTGACCATGGTGAATATGAACTTCTCTGTGGAGAAGATCAAGTTTGCCCTGAGATGCGTGCCAATTTATTCTCTAGATTATGTTTTGGATGGATTACTCCACTCATGCAACAAGGTTACAGAAAACCCATCACTGAGAAGGATGTTTGGAAGCTAGACAAATGGGATCAAACAGAGACATTAAATGAAAACTTCCAAAAGTGTTGGATGTCAGAATTTCAGAGCTCTAACCCTCGGCTTTTAAGAGTATTGAACAATAGCCTAGGGAAAAGGTTTTGGTGGGGAGGCGTCTATAAGATTGGTAATGATCTTTCTCAGTTTGTGGGGCCTATTTTGCTGAACCATCTCTTAGATTCAATGCAAAATGGAGATCCATCTTGGATTGGTTACATCTACGCCTTCTCCATATTTGTTGGAGTGTCAGTTGGTGTTCTATGTGAAGCACAGTATTTCCAGAACGTTATGCGTGTTGGTTTTCGGCTCAGATCAACATTGGTGGCTGCTATATTTAGGAAGTCTTTGAGGCTAACTCATGAAGGTCGAAAGAAGTTAACATCTGGGAGGCTTATGAATATGATAACAACAGATGCCAGTGCACTACAGCAAATATGTCAACAACTTCATGGACTATGGTCTGCACCATTCCGTATCACCATAGCTATGGTTCTCCTATACCAGCAACTAGGTGTTGCTTCACTTATTGGATCACTAATGCTAGTTCTCATTATACCACTTCAGACATTTGTGATTAGCAAAATGCGAAAACTGACAAAGGAAGGACTGCAACAGACAGACAAAAGGGTTGGTCTCATGAATGAAATTCTGGCTGCCATGGATACAGTAAAATGTTATGCGTGGGAAACAAGCTTTCAGTCTAGAATTCAAAGCATACGAAATGATGAGCTATCCTGGTTCCGCAAAGCGCAGCTGCTCTATGCTCTTAACACTTTTATACTAAACAGCATCCCAGTTCTCGTGACAGTGACCTCATTTGGAATGTTTACTTTACTTGGTGGAGAATTAACACCTGCAAGGGCATTTACCTCACTATCTCTGTTCCAAGTTTTGCGCTTTCCTTTAAATATGCTTCCAAATTTACTAAGTCAGGTTGCAAATGCAAATGTCTCATTGCAACGTTTGGAGGAACTTCTCTTGGCTGAGGAGCGAGATTTAAAACAAAATCCACCTATTGTACCAGGACTTCCAGCCATCTCAATTAAGAACGGATACTTTTCATGGGATCCTAAGGCAGAGAAGCCCACATTATCAAATATCAACATTGAAATACCAACTGGAAGCTTAGTTGCAATCATTGGTGGTACTGGAGAAGGGAAAACATCACTTATTTCAGCAATGATTGGAGAGCTACCTCTTGTAGCAGATGGAAATGCTACAATCAGAGGCACTGTTGCTTATGTTCCTCAGATTTCATGGATTTACAATGCTACAGTTCGTGAAAACATATTATTTGGATCAAAATTTGATTTTGAACGATATTGGAAGGCTATTGATGCCACTGCTTTACGGCATGATCTCAACTTCCTACCTGGACGTGATTTTACAGAGATTGGAGAAAGAGGAGTTAATATTAGTGGTGGACAAAAGCAAAGAGTTTCCTTAGCTAGGGCTGTATACTCAAATTCAGATGTATACATATTTGATGATCCTTTAAGTGCTCTTGATGCACATATTGCTCAAGAGGTTTTCAGGAACTGCATAAAGGAAGGGCTGCAAGGAAAAACCAGGGTTCTTGTCACCAACCAGCTTCATTTTCTCCCTCAGGTGGATAAAATTATTTTGGTTAATGAAGGCATGATTAAGGAGCAAGGAACCTTTGAGAAGTTGTCAAAATCTGGGCATCTATTTCAAAAACTAATGGAAAATGCTGGGAAAATGGAACAACAAGTAAGCAATAATGAAGAAGGAGATAGTCATGACAAGGCTAATGTTTTACCCTCGAATAATGAGGCAATTGTAGAGTTACCAAACGATGCAAGCTATGAGAAGAAGGGAAAATTACGAAAATCAATACTTGTTAAGAAAGAAGAGCGGGAGACTGGTGTGATTAGTTGGAAAGTTATACTGAGGTACAAATCTGCTCTGGGAGGACTGTGGGTAGTTTCTATACTCTTTGCATGCTATACATTAACAGAAGTTCTTCGAGTTTCAAGTAGCACATGGTTAAGTGTTTGGACAGCTCAAGATTCCACTGCAGCTAATGAAGCAGGATACTTTCTTTTAATCTATGCACTTTTCTCATTTGGACAGGTATCTGTGGCGCTTGCAAACTCTTATTGGTTGATCATCTCAAGTCTTCGTGCTGCCACAAGATTGCACGATGCAATGCTAGATAAAATCCTACGGGCTCCAATGGTATTCTTCCAAACTAATCCTGTGGGCCGCATAATTAATAGGTTTGCAAAAGACATGGGAGATATAGACACCAATGTTTTTAATATGGTGAATATGTTTCTGGGGCAAGTCTGGCAACTACTTTCAACATTTGTTCTTATAGGCACTGTGAGCACCATATCCCTGTGGGCCATAATGCCACTTCTGATCTTCTTTTATGCAGCTTATATATATTACCAGAGCACAGCTCGAGAGGTGAAGCGCATGGATTCAATTACAAGATCTCCTGTCTATGCACATTTTGGAGAATCATTGAATGGTTTGTCAAGCATTCGTGCTTACAAAGCATATGACAGGATGGCACACATTAATGGGAAATTCATGGATAATAATATCAGATTTACTCTTGTGAATATTAGTTCAAATCGTTGGCTGACCATAAGGTTAGAATCATTAGGAGGCCTCATGATTTGGTTGATAGCAACATTTGCTGTCTTGCAAAATGGAAGAGCTGAAAACCAGACAATGGTTGCATCTACAATGGGTCTACTTCTCAGTTATACTTTGAACATAACAAATCTCTTGAGTGGTGTTCTCAGACAAGCAAGTAGAGCTGAAAACAGTTTAAATGCTGTTGAGCGCGTTGACACGTATATAAATTTGGAAACTGAGGCTCCAGGTGTAATAGAGACAAATCGTCCACCACCAGGATGGCCAACATCAGGATCAATTGAGTTTGAGAATGTTGTTTTGAGTTACAGGCCTGAACTTCCTCCAGTCCTGCATGGATTGTCCTTTACAGTAAAGCCAACTGAGAAGATAGGGGTAGTTGGAAGAACTGGTGCAGGAAAGTCTAGCATGCTTAATGCATTATTCCGAATTGTGGAACTACAAACAGGAAATATTGTTATTGATGGTTGTGATATTTCTACATTTGGACTAGCAGATTTGAGAAGAGTTCTTACTATCATACCACAATCGCCAGTTCTTTTCTCCGGAACTGTTCGTTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACCTATGGGAAGCTTTGGAAAGGGCGCATTTGAAGGATGTAATAAGAAATCCATTTGGTCTAGATGCTCAGGTTTCAGAGGGAGGAGACAACTTCAGTGTTGGACAGAGGCAACTATTAAGTCTAGCTAGAGCATTGCTAAGAAGATCAAAGGTTCTTGTCTTAGATGAAGCTACTGCTGCTGTAGATGTTAGAACAGATGCCCTTATACAGAAAACTATTAGACAAGAATTTCAGTCCTGCACAATGCTCATCATTGCTCACAGATTAAATACAATTATTGACTGCAATCGGATTCTGTTGCTTGATGCTGGCCGGGTTCTTGAATACAGTTCACCAGATGAACTCTTACAAAATGAAGGAACTGCATTCTACAAGATGGTTCAAAGTACTGGACCTGCAAATGCTCAGTATTTATGTAGCCTAGTATTTGGAAGGACAGCAAACAAGGAGCTGGAAAGCCAAATGAAACAGTTAGCTTCTACCCACTGGGCTGCTGCTACCCAATTTGCCTTAGCTGCTACCCTTTCTTCTTTACACCATCACCTTCAAATGCCAAGTACTAATGATAATAAAAATATCCTTAATAAAACAAATGATGCAGTGACAACACTTCAGGAAGTTTTAGTGGGAAAGCATGATGAAGCCATAGAAGAGACATTGACTGCATATAATGTTCCTACAGAGAGATGGTGGACTACTCTCTATAAAGTTATTGAAGGTCTTGCTGTCTTGATCAGGTTGCCTCCGGACAACATTCAACAATTAGAACTTGATTTTGAAGAGAGATCTTTCGACTAA 4830 0.3979 MGFEPLIWYCKPAANSVWAKVVDSAFGSYTPCAINTLVISTSNLVLMGLCLYRIWLIIGNAKAQRFCLKSNYYNYILALLAGYCAAQPLLRLVTGNSAFNLNGETSFAPFEITALIIEALTWCSMIILILLETKVYIRQFRWLVRFGVIYVLVGDIVMLNLLLSVKDYCSRSALFMYISTVICQVLFGTLLLVYIPNLVTYSGHITTQAELPDHGEYELLCGEDQVCPEMRANLFSRLCFGWITPLMQQGYRKPITEKDVWKLDKWDQTETLNENFQKCWMSEFQSSNPRLLRVLNNSLGKRFWWGGVYKIGNDLSQFVGPILLNHLLDSMQNGDPSWIGYIYAFSIFVGVSVGVLCEAQYFQNVMRVGFRLRSTLVAAIFRKSLRLTHEGRKKLTSGRLMNMITTDASALQQICQQLHGLWSAPFRITIAMVLLYQQLGVASLIGSLMLVLIIPLQTFVISKMRKLTKEGLQQTDKRVGLMNEILAAMDTVKCYAWETSFQSRIQSIRNDELSWFRKAQLLYALNTFILNSIPVLVTVTSFGMFTLLGGELTPARAFTSLSLFQVLRFPLNMLPNLLSQVANANVSLQRLEELLLAEERDLKQNPPIVPGLPAISIKNGYFSWDPKAEKPTLSNINIEIPTGSLVAIIGGTGEGKTSLISAMIGELPLVADGNATIRGTVAYVPQISWIYNATVRENILFGSKFDFERYWKAIDATALRHDLNFLPGRDFTEIGERGVNISGGQKQRVSLARAVYSNSDVYIFDDPLSALDAHIAQEVFRNCIKEGLQGKTRVLVTNQLHFLPQVDKIILVNEGMIKEQGTFEKLSKSGHLFQKLMENAGKMEQQVSNNEEGDSHDKANVLPSNNEAIVELPNDASYEKKGKLRKSILVKKEERETGVISWKVILRYKSALGGLWVVSILFACYTLTEVLRVSSSTWLSVWTAQDSTAANEAGYFLLIYALFSFGQVSVALANSYWLIISSLRAATRLHDAMLDKILRAPMVFFQTNPVGRIINRFAKDMGDIDTNVFNMVNMFLGQVWQLLSTFVLIGTVSTISLWAIMPLLIFFYAAYIYYQSTAREVKRMDSITRSPVYAHFGESLNGLSSIRAYKAYDRMAHINGKFMDNNIRFTLVNISSNRWLTIRLESLGGLMIWLIATFAVLQNGRAENQTMVASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVDTYINLETEAPGVIETNRPPPGWPTSGSIEFENVVLSYRPELPPVLHGLSFTVKPTEKIGVVGRTGAGKSSMLNALFRIVELQTGNIVIDGCDISTFGLADLRRVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRNPFGLDAQVSEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMLIIAHRLNTIIDCNRILLLDAGRVLEYSSPDELLQNEGTAFYKMVQSTGPANAQYLCSLVFGRTANKELESQMKQLASTHWAAATQFALAATLSSLHHHLQMPSTNDNKNILNKTNDAVTTLQEVLVGKHDEAIEETLTAYNVPTERWWTTLYKVIEGLAVLIRLPPDNIQQLELDFEERSFD* 1610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02172 1609 SUPERFAMILY ABC transporter transmembrane region 915 1219 IPR036640 GO:0005524|GO:0016020
Rops7g02172 1609 Pfam ABC transporter transmembrane region 920 1168 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops7g02172 1609 Pfam ABC transporter transmembrane region 307 571 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops7g02172 1609 FunFam Multidrug resistance-associated protein member 4 1223 1474 - -
Rops7g02172 1609 Pfam ABC transporter 1256 1403 IPR003439 GO:0005524
Rops7g02172 1609 SUPERFAMILY ABC transporter transmembrane region 289 606 IPR036640 GO:0005524|GO:0016020
Rops7g02172 1609 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 839 IPR003439 GO:0005524
Rops7g02172 1609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 838 IPR027417 -
Rops7g02172 1609 Gene3D ABC transporter type 1, transmembrane domain 280 599 IPR036640 GO:0005524|GO:0016020
Rops7g02172 1609 Gene3D ABC transporter type 1, transmembrane domain 881 1220 IPR036640 GO:0005524|GO:0016020
Rops7g02172 1609 ProSitePatterns ABC transporters family signature. 1375 1389 IPR017871 GO:0005524|GO:0016887
Rops7g02172 1609 CDD ABCC_MRP_domain1 615 815 - -
Rops7g02172 1609 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 920 1202 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops7g02172 1609 FunFam ABC transporter C family member 2 882 1220 - -
Rops7g02172 1609 Gene3D - 600 864 IPR027417 -
Rops7g02172 1609 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524|GO:0016887
Rops7g02172 1609 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 229 1478 - -
Rops7g02172 1609 Gene3D - 1223 1474 IPR027417 -
Rops7g02172 1609 FunFam ABC transporter C family member 2 279 600 - -
Rops7g02172 1609 Pfam ABC transporter 633 768 IPR003439 GO:0005524
Rops7g02172 1609 CDD ABCC_MRP_domain2 1237 1456 - -
Rops7g02172 1609 SMART AAA_5 1265 1457 IPR003593 GO:0016887
Rops7g02172 1609 SMART AAA_5 642 822 IPR003593 GO:0016887
Rops7g02172 1609 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 583 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops7g02172 1609 CDD ABC_6TM_ABCC_D1 305 590 IPR044746 GO:0140359
Rops7g02172 1609 FunFam ABC transporter C family member 2 609 855 - -
Rops7g02172 1609 CDD ABC_6TM_ABCC_D2 918 1214 IPR044726 GO:0140359
Rops7g02172 1609 Coils Coil 574 601 - -
Rops7g02172 1609 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1239 1472 IPR003439 GO:0005524
Rops7g02172 1609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1229 1471 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02172 Rops-Chr7 36962098 36984318 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02172 595 829 Calmodulin-binding Proteins AT2G36910 27.451 9.75e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02172 - K05665 vun:114175221 2827.35