Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops7g02172 | ATGGGTTTTGAACCATTGATTTGGTACTGCAAACCAGCAGCAAACAGTGTTTGGGCTAAAGTAGTAGATAGTGCTTTTGGGTCATATACTCCTTGTGCAATTAATACTCTTGTTATCTCCACCTCCAATTTGGTTCTTATGGGCCTATGCTTGTATAGAATATGGCTTATCATTGGTAATGCTAAAGCTCAGAGGTTTTGTTTGAAATCAAATTACTATAATTATATTCTGGCATTGTTGGCTGGTTATTGTGCTGCTCAGCCTTTGTTGAGATTGGTAACTGGAAATTCAGCCTTCAATCTGAATGGGGAGACTAGCTTTGCTCCTTTTGAGATAACAGCTTTGATCATTGAAGCACTTACTTGGTGCTCAATGATAATTCTCATCCTCTTGGAAACCAAGGTTTATATCCGGCAATTTAGGTGGTTGGTGCGGTTTGGTGTTATTTATGTTTTGGTGGGAGACATTGTAATGCTTAACCTTCTTCTGTCAGTGAAAGATTACTGCAGCAGATCTGCTCTGTTTATGTACATTAGCACTGTTATCTGCCAGGTGTTGTTTGGTACCTTACTTCTTGTTTACATTCCTAATTTGGTTACTTACTCTGGCCATATAACAACACAAGCTGAGCTACCTGACCATGGTGAATATGAACTTCTCTGTGGAGAAGATCAAGTTTGCCCTGAGATGCGTGCCAATTTATTCTCTAGATTATGTTTTGGATGGATTACTCCACTCATGCAACAAGGTTACAGAAAACCCATCACTGAGAAGGATGTTTGGAAGCTAGACAAATGGGATCAAACAGAGACATTAAATGAAAACTTCCAAAAGTGTTGGATGTCAGAATTTCAGAGCTCTAACCCTCGGCTTTTAAGAGTATTGAACAATAGCCTAGGGAAAAGGTTTTGGTGGGGAGGCGTCTATAAGATTGGTAATGATCTTTCTCAGTTTGTGGGGCCTATTTTGCTGAACCATCTCTTAGATTCAATGCAAAATGGAGATCCATCTTGGATTGGTTACATCTACGCCTTCTCCATATTTGTTGGAGTGTCAGTTGGTGTTCTATGTGAAGCACAGTATTTCCAGAACGTTATGCGTGTTGGTTTTCGGCTCAGATCAACATTGGTGGCTGCTATATTTAGGAAGTCTTTGAGGCTAACTCATGAAGGTCGAAAGAAGTTAACATCTGGGAGGCTTATGAATATGATAACAACAGATGCCAGTGCACTACAGCAAATATGTCAACAACTTCATGGACTATGGTCTGCACCATTCCGTATCACCATAGCTATGGTTCTCCTATACCAGCAACTAGGTGTTGCTTCACTTATTGGATCACTAATGCTAGTTCTCATTATACCACTTCAGACATTTGTGATTAGCAAAATGCGAAAACTGACAAAGGAAGGACTGCAACAGACAGACAAAAGGGTTGGTCTCATGAATGAAATTCTGGCTGCCATGGATACAGTAAAATGTTATGCGTGGGAAACAAGCTTTCAGTCTAGAATTCAAAGCATACGAAATGATGAGCTATCCTGGTTCCGCAAAGCGCAGCTGCTCTATGCTCTTAACACTTTTATACTAAACAGCATCCCAGTTCTCGTGACAGTGACCTCATTTGGAATGTTTACTTTACTTGGTGGAGAATTAACACCTGCAAGGGCATTTACCTCACTATCTCTGTTCCAAGTTTTGCGCTTTCCTTTAAATATGCTTCCAAATTTACTAAGTCAGGTTGCAAATGCAAATGTCTCATTGCAACGTTTGGAGGAACTTCTCTTGGCTGAGGAGCGAGATTTAAAACAAAATCCACCTATTGTACCAGGACTTCCAGCCATCTCAATTAAGAACGGATACTTTTCATGGGATCCTAAGGCAGAGAAGCCCACATTATCAAATATCAACATTGAAATACCAACTGGAAGCTTAGTTGCAATCATTGGTGGTACTGGAGAAGGGAAAACATCACTTATTTCAGCAATGATTGGAGAGCTACCTCTTGTAGCAGATGGAAATGCTACAATCAGAGGCACTGTTGCTTATGTTCCTCAGATTTCATGGATTTACAATGCTACAGTTCGTGAAAACATATTATTTGGATCAAAATTTGATTTTGAACGATATTGGAAGGCTATTGATGCCACTGCTTTACGGCATGATCTCAACTTCCTACCTGGACGTGATTTTACAGAGATTGGAGAAAGAGGAGTTAATATTAGTGGTGGACAAAAGCAAAGAGTTTCCTTAGCTAGGGCTGTATACTCAAATTCAGATGTATACATATTTGATGATCCTTTAAGTGCTCTTGATGCACATATTGCTCAAGAGGTTTTCAGGAACTGCATAAAGGAAGGGCTGCAAGGAAAAACCAGGGTTCTTGTCACCAACCAGCTTCATTTTCTCCCTCAGGTGGATAAAATTATTTTGGTTAATGAAGGCATGATTAAGGAGCAAGGAACCTTTGAGAAGTTGTCAAAATCTGGGCATCTATTTCAAAAACTAATGGAAAATGCTGGGAAAATGGAACAACAAGTAAGCAATAATGAAGAAGGAGATAGTCATGACAAGGCTAATGTTTTACCCTCGAATAATGAGGCAATTGTAGAGTTACCAAACGATGCAAGCTATGAGAAGAAGGGAAAATTACGAAAATCAATACTTGTTAAGAAAGAAGAGCGGGAGACTGGTGTGATTAGTTGGAAAGTTATACTGAGGTACAAATCTGCTCTGGGAGGACTGTGGGTAGTTTCTATACTCTTTGCATGCTATACATTAACAGAAGTTCTTCGAGTTTCAAGTAGCACATGGTTAAGTGTTTGGACAGCTCAAGATTCCACTGCAGCTAATGAAGCAGGATACTTTCTTTTAATCTATGCACTTTTCTCATTTGGACAGGTATCTGTGGCGCTTGCAAACTCTTATTGGTTGATCATCTCAAGTCTTCGTGCTGCCACAAGATTGCACGATGCAATGCTAGATAAAATCCTACGGGCTCCAATGGTATTCTTCCAAACTAATCCTGTGGGCCGCATAATTAATAGGTTTGCAAAAGACATGGGAGATATAGACACCAATGTTTTTAATATGGTGAATATGTTTCTGGGGCAAGTCTGGCAACTACTTTCAACATTTGTTCTTATAGGCACTGTGAGCACCATATCCCTGTGGGCCATAATGCCACTTCTGATCTTCTTTTATGCAGCTTATATATATTACCAGAGCACAGCTCGAGAGGTGAAGCGCATGGATTCAATTACAAGATCTCCTGTCTATGCACATTTTGGAGAATCATTGAATGGTTTGTCAAGCATTCGTGCTTACAAAGCATATGACAGGATGGCACACATTAATGGGAAATTCATGGATAATAATATCAGATTTACTCTTGTGAATATTAGTTCAAATCGTTGGCTGACCATAAGGTTAGAATCATTAGGAGGCCTCATGATTTGGTTGATAGCAACATTTGCTGTCTTGCAAAATGGAAGAGCTGAAAACCAGACAATGGTTGCATCTACAATGGGTCTACTTCTCAGTTATACTTTGAACATAACAAATCTCTTGAGTGGTGTTCTCAGACAAGCAAGTAGAGCTGAAAACAGTTTAAATGCTGTTGAGCGCGTTGACACGTATATAAATTTGGAAACTGAGGCTCCAGGTGTAATAGAGACAAATCGTCCACCACCAGGATGGCCAACATCAGGATCAATTGAGTTTGAGAATGTTGTTTTGAGTTACAGGCCTGAACTTCCTCCAGTCCTGCATGGATTGTCCTTTACAGTAAAGCCAACTGAGAAGATAGGGGTAGTTGGAAGAACTGGTGCAGGAAAGTCTAGCATGCTTAATGCATTATTCCGAATTGTGGAACTACAAACAGGAAATATTGTTATTGATGGTTGTGATATTTCTACATTTGGACTAGCAGATTTGAGAAGAGTTCTTACTATCATACCACAATCGCCAGTTCTTTTCTCCGGAACTGTTCGTTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACCTATGGGAAGCTTTGGAAAGGGCGCATTTGAAGGATGTAATAAGAAATCCATTTGGTCTAGATGCTCAGGTTTCAGAGGGAGGAGACAACTTCAGTGTTGGACAGAGGCAACTATTAAGTCTAGCTAGAGCATTGCTAAGAAGATCAAAGGTTCTTGTCTTAGATGAAGCTACTGCTGCTGTAGATGTTAGAACAGATGCCCTTATACAGAAAACTATTAGACAAGAATTTCAGTCCTGCACAATGCTCATCATTGCTCACAGATTAAATACAATTATTGACTGCAATCGGATTCTGTTGCTTGATGCTGGCCGGGTTCTTGAATACAGTTCACCAGATGAACTCTTACAAAATGAAGGAACTGCATTCTACAAGATGGTTCAAAGTACTGGACCTGCAAATGCTCAGTATTTATGTAGCCTAGTATTTGGAAGGACAGCAAACAAGGAGCTGGAAAGCCAAATGAAACAGTTAGCTTCTACCCACTGGGCTGCTGCTACCCAATTTGCCTTAGCTGCTACCCTTTCTTCTTTACACCATCACCTTCAAATGCCAAGTACTAATGATAATAAAAATATCCTTAATAAAACAAATGATGCAGTGACAACACTTCAGGAAGTTTTAGTGGGAAAGCATGATGAAGCCATAGAAGAGACATTGACTGCATATAATGTTCCTACAGAGAGATGGTGGACTACTCTCTATAAAGTTATTGAAGGTCTTGCTGTCTTGATCAGGTTGCCTCCGGACAACATTCAACAATTAGAACTTGATTTTGAAGAGAGATCTTTCGACTAA | 4830 | 0.3979 | MGFEPLIWYCKPAANSVWAKVVDSAFGSYTPCAINTLVISTSNLVLMGLCLYRIWLIIGNAKAQRFCLKSNYYNYILALLAGYCAAQPLLRLVTGNSAFNLNGETSFAPFEITALIIEALTWCSMIILILLETKVYIRQFRWLVRFGVIYVLVGDIVMLNLLLSVKDYCSRSALFMYISTVICQVLFGTLLLVYIPNLVTYSGHITTQAELPDHGEYELLCGEDQVCPEMRANLFSRLCFGWITPLMQQGYRKPITEKDVWKLDKWDQTETLNENFQKCWMSEFQSSNPRLLRVLNNSLGKRFWWGGVYKIGNDLSQFVGPILLNHLLDSMQNGDPSWIGYIYAFSIFVGVSVGVLCEAQYFQNVMRVGFRLRSTLVAAIFRKSLRLTHEGRKKLTSGRLMNMITTDASALQQICQQLHGLWSAPFRITIAMVLLYQQLGVASLIGSLMLVLIIPLQTFVISKMRKLTKEGLQQTDKRVGLMNEILAAMDTVKCYAWETSFQSRIQSIRNDELSWFRKAQLLYALNTFILNSIPVLVTVTSFGMFTLLGGELTPARAFTSLSLFQVLRFPLNMLPNLLSQVANANVSLQRLEELLLAEERDLKQNPPIVPGLPAISIKNGYFSWDPKAEKPTLSNINIEIPTGSLVAIIGGTGEGKTSLISAMIGELPLVADGNATIRGTVAYVPQISWIYNATVRENILFGSKFDFERYWKAIDATALRHDLNFLPGRDFTEIGERGVNISGGQKQRVSLARAVYSNSDVYIFDDPLSALDAHIAQEVFRNCIKEGLQGKTRVLVTNQLHFLPQVDKIILVNEGMIKEQGTFEKLSKSGHLFQKLMENAGKMEQQVSNNEEGDSHDKANVLPSNNEAIVELPNDASYEKKGKLRKSILVKKEERETGVISWKVILRYKSALGGLWVVSILFACYTLTEVLRVSSSTWLSVWTAQDSTAANEAGYFLLIYALFSFGQVSVALANSYWLIISSLRAATRLHDAMLDKILRAPMVFFQTNPVGRIINRFAKDMGDIDTNVFNMVNMFLGQVWQLLSTFVLIGTVSTISLWAIMPLLIFFYAAYIYYQSTAREVKRMDSITRSPVYAHFGESLNGLSSIRAYKAYDRMAHINGKFMDNNIRFTLVNISSNRWLTIRLESLGGLMIWLIATFAVLQNGRAENQTMVASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVDTYINLETEAPGVIETNRPPPGWPTSGSIEFENVVLSYRPELPPVLHGLSFTVKPTEKIGVVGRTGAGKSSMLNALFRIVELQTGNIVIDGCDISTFGLADLRRVLTIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRNPFGLDAQVSEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMLIIAHRLNTIIDCNRILLLDAGRVLEYSSPDELLQNEGTAFYKMVQSTGPANAQYLCSLVFGRTANKELESQMKQLASTHWAAATQFALAATLSSLHHHLQMPSTNDNKNILNKTNDAVTTLQEVLVGKHDEAIEETLTAYNVPTERWWTTLYKVIEGLAVLIRLPPDNIQQLELDFEERSFD* | 1610 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops7g02172 | 1609 | SUPERFAMILY | ABC transporter transmembrane region | 915 | 1219 | IPR036640 | GO:0005524|GO:0016020 | |
Rops7g02172 | 1609 | Pfam | ABC transporter transmembrane region | 920 | 1168 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Rops7g02172 | 1609 | Pfam | ABC transporter transmembrane region | 307 | 571 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Rops7g02172 | 1609 | FunFam | Multidrug resistance-associated protein member 4 | 1223 | 1474 | - | - | |
Rops7g02172 | 1609 | Pfam | ABC transporter | 1256 | 1403 | IPR003439 | GO:0005524 | |
Rops7g02172 | 1609 | SUPERFAMILY | ABC transporter transmembrane region | 289 | 606 | IPR036640 | GO:0005524|GO:0016020 | |
Rops7g02172 | 1609 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 615 | 839 | IPR003439 | GO:0005524 | |
Rops7g02172 | 1609 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 609 | 838 | IPR027417 | - | |
Rops7g02172 | 1609 | Gene3D | ABC transporter type 1, transmembrane domain | 280 | 599 | IPR036640 | GO:0005524|GO:0016020 | |
Rops7g02172 | 1609 | Gene3D | ABC transporter type 1, transmembrane domain | 881 | 1220 | IPR036640 | GO:0005524|GO:0016020 | |
Rops7g02172 | 1609 | ProSitePatterns | ABC transporters family signature. | 1375 | 1389 | IPR017871 | GO:0005524|GO:0016887 | |
Rops7g02172 | 1609 | CDD | ABCC_MRP_domain1 | 615 | 815 | - | - | |
Rops7g02172 | 1609 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 920 | 1202 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Rops7g02172 | 1609 | FunFam | ABC transporter C family member 2 | 882 | 1220 | - | - | |
Rops7g02172 | 1609 | Gene3D | - | 600 | 864 | IPR027417 | - | |
Rops7g02172 | 1609 | ProSitePatterns | ABC transporters family signature. | 741 | 755 | IPR017871 | GO:0005524|GO:0016887 | |
Rops7g02172 | 1609 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 229 | 1478 | - | - | |
Rops7g02172 | 1609 | Gene3D | - | 1223 | 1474 | IPR027417 | - | |
Rops7g02172 | 1609 | FunFam | ABC transporter C family member 2 | 279 | 600 | - | - | |
Rops7g02172 | 1609 | Pfam | ABC transporter | 633 | 768 | IPR003439 | GO:0005524 | |
Rops7g02172 | 1609 | CDD | ABCC_MRP_domain2 | 1237 | 1456 | - | - | |
Rops7g02172 | 1609 | SMART | AAA_5 | 1265 | 1457 | IPR003593 | GO:0016887 | |
Rops7g02172 | 1609 | SMART | AAA_5 | 642 | 822 | IPR003593 | GO:0016887 | |
Rops7g02172 | 1609 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 304 | 583 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Rops7g02172 | 1609 | CDD | ABC_6TM_ABCC_D1 | 305 | 590 | IPR044746 | GO:0140359 | |
Rops7g02172 | 1609 | FunFam | ABC transporter C family member 2 | 609 | 855 | - | - | |
Rops7g02172 | 1609 | CDD | ABC_6TM_ABCC_D2 | 918 | 1214 | IPR044726 | GO:0140359 | |
Rops7g02172 | 1609 | Coils | Coil | 574 | 601 | - | - | |
Rops7g02172 | 1609 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1239 | 1472 | IPR003439 | GO:0005524 | |
Rops7g02172 | 1609 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1229 | 1471 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops7g02172 | Rops-Chr7 | 36962098 | 36984318 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops7g02172 | 595 | 829 | Calmodulin-binding Proteins | AT2G36910 | 27.451 | 9.75e-22 | 101 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops7g02172 | - | K05665 | vun:114175221 | 2827.35 |