Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02166 ATGAGGCAAATGACAAATGAGATCGAAGATAATGTGCTCTGCAATGATCAAGCTGGGTCACAGATGAATGATGAGGGTAAAGGAGGAAATGTTGGTGGAGTTGTTCTGAAGAAAGGGCCATGGACATCTACTGAAGATGCTATTTTGGTTGAATATGTCAAGAAGCATGGAGAGGGGAATTGGAATGCTGTTCAGAAGCACTCGGGCCTGTCTCGTTGCGGAAAAAGTTGTCGACTGCGATGGGCAAATCACCTAAGGCCAAATTTAAAAAAAGGGGCGTTTACCGCAGAAGAGGAGCAGTTGATTGCGGAACTCCATGCCAAAATGGGAAACAAATGGGCACGCATGGCTGCACATTTGCCTGGTCGAACTGATAATGAAATAAAGAACTACTGGAACACCCGGATCAAGAGGCGTCAACGGGCTGGCTTGCCTCTTTATCCTCCTGATGTGTTGTTGCAGGCAAACCAAGAGAGTCAGCATGGCCAAGATACTGGTGGAATTAATGATGGTGATAGAAACCATCATGATATCTTGTCGGAAAACAACTATGAGATACATGATGCAATATTTGACAGTTTGAAGGAAAATCAGGGAATCTTACCTTTTGTGCCTGAACTTCCTGATATTTCTGCTAATAGCATTCTGCTAAACAGTCTTGGTTCTCCTCCATATTGTAATTTTGTGCCATCAACATTGCCTAACCATAATCATCTACAAGAGTCAACAATGTCTTTTCTTGGTTCTTGTGGAACAAACAGGAATGGGTTTTATCCATTTGACCATATTCAGGATAATACTTCTGATAAGATTGCACAATCATTTGGATTGCATTCTCCCCATAACCCTGTTTCATCCTCACATAGCTCAATTTGTTACAGCCATGCAGATGGCAATTCCTCTACTTCTAAGCCAACTTCTATGGCTCTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACCGATTTTGGTAGCTGGGGTACATCTCCCCCGCTTCCATTGAATGAATCTGCTGATGCTTTCAACCAGTCTCCTCTGCCACCTGGTGCACTAGATTTGGATTGCTCTTCACCATATAATAGTGGCTTGCTTGATGCCTTACTTTATCAGGCGAAGACTCTTACTTGTTCAAAGAACAATTGTTCTGACAAGAGTTCAAATTCATCTACTGCAACACCTGGTAACAGAGCTGAGAGTTCTGCTTTGAACATGTACGAGACAGAATGGGAGGATTATGCTGACCCTGTATCTCCCTATGGTGCAACTTCAATCCTGGATGAGAATCATGCTGTTAGCACCAATGGAAACTCATGGGATAAATGGGCACCTGTTCGGAACTTTAGTGGCAACAATATGAATTTAGAGTCTGTTGACCAAGTTTGTAACCCTAAGAGTGAAAATCAAGCCATGTCTCTGTTGAATATCACCTGGCCAGATGTCTTGTTAGCTTCAGATTGGCATGAGCAGTTTTCTGAGCATGGCAAGAACCAAGCCATCATGACTGAAGCAAGTGATAATTTAGTGGACTCTAAGCATATGAACTGGTTTTTGAATAATTTGTAG 1566 0.4259 MRQMTNEIEDNVLCNDQAGSQMNDEGKGGNVGGVVLKKGPWTSTEDAILVEYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEEQLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPDVLLQANQESQHGQDTGGINDGDRNHHDILSENNYEIHDAIFDSLKENQGILPFVPELPDISANSILLNSLGSPPYCNFVPSTLPNHNHLQESTMSFLGSCGTNRNGFYPFDHIQDNTSDKIAQSFGLHSPHNPVSSSHSSICYSHADGNSSTSKPTSMALKLELPSLQYPETDFGSWGTSPPLPLNESADAFNQSPLPPGALDLDCSSPYNSGLLDALLYQAKTLTCSKNNCSDKSSNSSTATPGNRAESSALNMYETEWEDYADPVSPYGATSILDENHAVSTNGNSWDKWAPVRNFSGNNMNLESVDQVCNPKSENQAMSLLNITWPDVLLASDWHEQFSEHGKNQAIMTEASDNLVDSKHMNWFLNNL* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02166 521 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 85 IPR017930 -
Rops7g02166 521 FunFam MYB-related transcription factor 37 90 - -
Rops7g02166 521 CDD SANT 40 85 IPR001005 -
Rops7g02166 521 Pfam Myb-like DNA-binding domain 91 134 IPR001005 -
Rops7g02166 521 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Rops7g02166 521 MobiDBLite consensus disorder prediction 380 399 - -
Rops7g02166 521 ProSiteProfiles Myb-like domain profile. 36 85 IPR001005 -
Rops7g02166 521 MobiDBLite consensus disorder prediction 323 346 - -
Rops7g02166 521 SUPERFAMILY Homeodomain-like 37 132 IPR009057 -
Rops7g02166 521 Gene3D - 93 139 - -
Rops7g02166 521 FunFam Transcription factor GAMYB 93 139 - -
Rops7g02166 521 Gene3D - 37 90 - -
Rops7g02166 521 SMART sant 90 138 IPR001005 -
Rops7g02166 521 SMART sant 37 87 IPR001005 -
Rops7g02166 521 MobiDBLite consensus disorder prediction 323 343 - -
Rops7g02166 521 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Rops7g02166 521 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 5 503 - -
Rops7g02166 521 CDD SANT 93 134 IPR001005 -
Rops7g02166 521 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02166 Rops-Chr7 36859086 36864682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02166 35 490 MYB Transcription Factor Family AT3G11440 45.607 2.83e-113 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops7g02166 Myb_DNA-binding 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02166 K09422 - gmx:100805804 772.311