Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02162 ATGGAAGAAGGTTTAGGCCAAAACTCATTTCCTCCTTCAGGTTCCATTGACAAGTCCAAGATCCTGGATATCAAGCCTCTGAGGAGTTTGATACCTGTTTTCCCAATGTCTCCTCAAGCTCCACCTTCAGGCCAGTACCCTTCTGGGTTTTCTCCATTTTTCCCATTTGGTGCACCTCAGCAAACTTCACCCTCTGGGGTGACAACAAGGGGTGCTGCCATACCAGCTCCAATAAGGGCATATAGGAGTCCACAAGGTGCAGGTGACACTAATTCAACAATGGAGGGGTTCAATGATCATGATACTTCTGGTAAAAAAAAACATAAAGCATCACATTCGCGCCGTTCCAAATCATCCGTAAAGAAGGATAAGAAAAGTAAAGAGTCACATGTTGATTCAAGTGCTTTAGTTGGTATGAGCCCGGCACAAAGAGAAGATGGTAACCGGGAAGTGGTTAATCTTGTACTCATGACATTCGATGCACTTCGAAGAAGGCTTTGCCAACTTGAAGATGCCAAGGAATTGAGCACAGGTTCGATCAAACGTGCAGATTTAAAGGCTGGTAACACTTTGATGACCAAAGGAATTCGAACAAACATGAAGAAGAGAATGGGATTAGTTCCTGGGATTGAGATTGGGGACATTTTCTTTTTCAGAATGGAATTATGTATTGTGGGTTTGCATGCTCCTTCGATGGGTGGAATTGATGCCATGCATTTCAGGGGTGAGTTTGAGGAAGAAACTGTGGCTATAAGCATTGTTTCTTCAGGAGAATATGATGATAATGCAGAGGATAATGATGTTATAATTTATACTGGTCAGGGTGGGAACTTCAACAAGAAAGATAAGCATGTGATGGATCAGAAGCTTCAAAGGGGTAATCTTGCTTTGGATAGAAGTTCGCGGCAACACAATGAAGTAAGAGTCATCCGGGGCATGAGAGATGCTGTGAATCCAAATGCAAAAATCTATGTATATGATGGTCTGTATAAAATTCAAGATTCATGGATAGAAAAAGCAAAAGGTGGCGGTGGCGTATTTAAGTATAAGTTAGTAAGAATGCCTGGACAGCCTAGTGCCTTTGCCATTTGGAAATCAGTTGAGAAGTGGAAGTCTGGCTTCCCTTCAAGGACTGGGCTTATTCTTGCAGACCTCTCCTCAGGAGCTGAGAGTATTCCTGTATCACTTGTCAATGATGTTGATAACGCAAAAGCGCCTGCCTATTTCACTTATTTCCATTCTCTTAGACATCCGAAATCATTCACTTTGATGCAGCCTTCACATGGGTGCAACTGTGCTAATAGTAAAGCATGTGTCCCTGGTGATTTGAACTGCTCTTGCATTAGGAGAAATGAAGGTGATTTTCCATATTCTGGCAACGGCATTCTGGTGAGTCGGAAGCCATTGATTCATGAATGTGGCCCCACATGTCAGTGTTTTCCTAACTGCAAAAATCGAGTATCCCAAACTGGTTTAAAGCACCACATGGAAGTGTTCAAGACAAAGGATAAAGGGTGGGGCCTTCGATCACTCGATCCTATTCGTGCTGGTACTTTTATTTGTGAGTATGCAGGAGAAGTTATTGACAGAGCCAGGGTAAGTCAGCTTGTGAAGGAAGGAGATAATGATGAGTATGTTTTTGATACAACCCGTATTTATAATTCATTCAAGTGGAATTATGAGCCTAGGTTACTGGAAGAAGTGAGTACAAATGAGTCTAGTGAGGATTATGCAATACCATATCCTCTAATTATAAGTGCCAAGAATGTTGGAAATGTGGCTAGATTCATGAATCACAGTTGCTCCCCAAATGTTTTCTGGCAGCCTGTCTTGTATGAAGAAAACAACCAATCCTTCCTCCATGTTGCATTTTTTGCACTCAGACACATTCCTCCGATGACAGAGTTAACATATGATTATGGATTTGCCCGATCTGATGAGGGTAGCAGTGCACCCAAAGGGAGAAAGAAATGCTTATGTGGATCATCAAACTGCCGTGGTTCATTTGGTTGA 2013 0.4228 MEEGLGQNSFPPSGSIDKSKILDIKPLRSLIPVFPMSPQAPPSGQYPSGFSPFFPFGAPQQTSPSGVTTRGAAIPAPIRAYRSPQGAGDTNSTMEGFNDHDTSGKKKHKASHSRRSKSSVKKDKKSKESHVDSSALVGMSPAQREDGNREVVNLVLMTFDALRRRLCQLEDAKELSTGSIKRADLKAGNTLMTKGIRTNMKKRMGLVPGIEIGDIFFFRMELCIVGLHAPSMGGIDAMHFRGEFEEETVAISIVSSGEYDDNAEDNDVIIYTGQGGNFNKKDKHVMDQKLQRGNLALDRSSRQHNEVRVIRGMRDAVNPNAKIYVYDGLYKIQDSWIEKAKGGGGVFKYKLVRMPGQPSAFAIWKSVEKWKSGFPSRTGLILADLSSGAESIPVSLVNDVDNAKAPAYFTYFHSLRHPKSFTLMQPSHGCNCANSKACVPGDLNCSCIRRNEGDFPYSGNGILVSRKPLIHECGPTCQCFPNCKNRVSQTGLKHHMEVFKTKDKGWGLRSLDPIRAGTFICEYAGEVIDRARVSQLVKEGDNDEYVFDTTRIYNSFKWNYEPRLLEEVSTNESSEDYAIPYPLIISAKNVGNVARFMNHSCSPNVFWQPVLYEENNQSFLHVAFFALRHIPPMTELTYDYGFARSDEGSSAPKGRKKCLCGSSNCRGSFG* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02162 670 SMART G9a_1 200 357 IPR003105 -
Rops7g02162 670 SMART preset_2 382 478 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops7g02162 670 ProSiteProfiles YDG domain profile. 205 353 IPR003105 -
Rops7g02162 670 Gene3D SET domain 375 669 IPR046341 -
Rops7g02162 670 SUPERFAMILY SET domain 391 667 IPR046341 -
Rops7g02162 670 SUPERFAMILY PUA domain-like 187 374 IPR015947 -
Rops7g02162 670 MobiDBLite consensus disorder prediction 1 21 - -
Rops7g02162 670 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 188 372 - -
Rops7g02162 670 Pfam SAD/SRA domain 204 357 IPR003105 -
Rops7g02162 670 ProSiteProfiles Post-SET domain profile. 654 670 IPR003616 -
Rops7g02162 670 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 101 664 - -
Rops7g02162 670 SMART set_7 494 647 IPR001214 GO:0005515
Rops7g02162 670 MobiDBLite consensus disorder prediction 55 69 - -
Rops7g02162 670 MobiDBLite consensus disorder prediction 107 121 - -
Rops7g02162 670 ProSiteProfiles Pre-SET domain profile. 428 491 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops7g02162 670 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 670 IPR025794 GO:0016571
Rops7g02162 670 Pfam SET domain 505 641 IPR001214 GO:0005515
Rops7g02162 670 MobiDBLite consensus disorder prediction 35 144 - -
Rops7g02162 670 Gene3D - 188 372 IPR036987 -
Rops7g02162 670 ProSiteProfiles SET domain profile. 494 641 IPR001214 GO:0005515
Rops7g02162 670 Pfam Pre-SET motif 386 486 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02162 Rops-Chr7 36706996 36711226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02162 6 670 Su(var)3-9 homologs AT1G73100 54.758 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops7g02162 SAD_SRA 1.6e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02162 K24405 - gmx:100812173 1112.06