Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02143 ATGACTTGTTCCACATACCCATATACTCCTCGTGCTGAATGCTATGAACGTGGAGCCCTTACTATTTATTGGAACTACAACTACGGTGCTGTTGGAGAAGCTTTGAAGGTGAATCTACTCACCCAGTACTACTGCACCAGCGTTAAAGTTTCTAGGCACAAGGATTTCGTTAAGAGTACGGGGCACCCCAAGGCTAACCGTGAGAAGAGGACCCGAATCATGTTTAAGACTTTTAATACACTAGCTATGTACGTAACCATTCAAGCTGTTCTTGCACTGCATGCAAGAGGTCGCATAACGGGTATTGTGTTTGGTTCTGGTGATGGTGTGAGCCACACGGTGCCCATGTATGAAGGCTATGCTCTCCCTCAGGTGTTCCTTGGGTTGGACCTTGATGGCCATGATTTAGCAAAATATTTGATGAAGATTCTGACTGAGCGAGAATGCACTTTCATTACCACTGTGGAGCAAGGAATGGTACGTAATGTAAAATTAGCATATGTGACCCTTGACCAGAACAATGAGCCCAAGAGACCATCATACAGGCCCCACATAATGGACCCATCACGTATTGTACGTAGAAGTGGTCACAAAAAAAACACTATAGCATGGGGCACCAAGCACGAAAGCATGGGGGCAGCGACCAAGGGTATGGGATACCACGCAAATTCTTTCTTGAAAGGTGTTGTTTGGAGAGACCAAGGAGTTTGCTTGGGTCCGTGA 723 0.4606 MTCSTYPYTPRAECYERGALTIYWNYNYGAVGEALKVNLLTQYYCTSVKVSRHKDFVKSTGHPKANREKRTRIMFKTFNTLAMYVTIQAVLALHARGRITGIVFGSGDGVSHTVPMYEGYALPQVFLGLDLDGHDLAKYLMKILTERECTFITTVEQGMVRNVKLAYVTLDQNNEPKRPSYRPHIMDPSRIVRRSGHKKNTIAWGTKHESMGAATKGMGYHANSFLKGVVWRDQGVCLGP* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02143 240 Gene3D Actin; Chain A, domain 4 137 180 - -
Rops7g02143 240 PRINTS Actin signature 66 79 IPR004000 -
Rops7g02143 240 PRINTS Actin signature 91 110 IPR004000 -
Rops7g02143 240 PRINTS Actin signature 16 38 IPR004000 -
Rops7g02143 240 Gene3D - 87 136 - -
Rops7g02143 240 SUPERFAMILY Lysozyme-like 4 41 IPR023346 -
Rops7g02143 240 PANTHER ACTIN 36 178 IPR004000 -
Rops7g02143 240 SUPERFAMILY Actin-like ATPase domain 56 103 IPR043129 -
Rops7g02143 240 Gene3D - 62 85 - -
Rops7g02143 240 Gene3D Endochitinase, domain 2 2 42 - -
Rops7g02143 240 Pfam Actin 60 175 IPR004000 -
Rops7g02143 240 SUPERFAMILY Actin-like ATPase domain 97 178 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02143 Rops-Chr7 36384495 36385217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02143 16 175 Cytoskeleton Gene Families AT3G12110 53.614 4.95e-46 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02143 K05692 - dgt:114519547 153.68