Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02108 ATGGCTTCGGAGAAGAAACTGTCGAATCCAATGAGGGAAATAAAAGTCCAGAAGCTCGTTCTCAACATCTCTGTCGGCGAGAGCGGAGATCGTCTCACCAGAGCCGCTAAGGTGCTCGAACAGCTTAGTGGCCAAACCCCTGTTTTCTCCAAAGCTAGATACACTGTTCGTTCATTCGGTATTAGAAGAAATGAAAAGATTGCATGCTATGTCACTGTTAGAGGCGACAAGGCTATGCAGCTTCTGGAGAGTGGTTTGAAGGTCAAGGAATATGAACTCCTCAGGAGAAACTTTAGTGATACTGGTTGTTTTGGCTTCGGTATTCAAGAGCATATTGATTTGGGAATCAAGTATGATCCTTCAACTGGTATTTATGGAATGGATTTCTTCGTCGTTTTGGAGCGACCCGGTTACCGTGTGGGACGACGTCGTCGTTGCAAGTCTCGTGTTGGAATCCAGCATCGTGTCACTAAGGAGGATGCCATGAAATGGTTCCAAGTTAAATATGAAGGTGTCATCCTAAACAAGTCTAATGCAATTGTTGGTTAG 549 0.4481 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSNAIVG* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02108 182 ProSitePatterns Ribosomal protein L5 signature. 39 55 IPR020929 GO:0003735|GO:0005840|GO:0006412
Rops7g02108 182 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 172 IPR002132 GO:0003735|GO:0005840|GO:0006412
Rops7g02108 182 Pfam ribosomal L5P family C-terminus 66 164 IPR031309 -
Rops7g02108 182 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 2 176 IPR002132 GO:0003735|GO:0005840|GO:0006412
Rops7g02108 182 SUPERFAMILY RL5-like 8 173 IPR022803 -
Rops7g02108 182 FunFam 60S ribosomal protein L11 2 174 - -
Rops7g02108 182 Gene3D - 2 177 IPR022803 -
Rops7g02108 182 Pfam Ribosomal protein L5 9 62 IPR031310 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02108 Rops-Chr7 35202774 35206090 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02108 1 182 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 94.505 3.60e-129 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02108 K02868 - gmx:100791687 340.502