Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02105 ATGGCTTTGAGGTTTATAGCGATTTCGGCGGTTTCTACAGTGTTAAGTTTTGTGGGTCTGCAGTTTTGCACAGACTTGTCATTAGACAAACTTAAATCAGATGGACTAATTGGCTGGAATTCAATTCACTTGGACAATGCCAGCCATGATGTCGAGTTACCGTTGGGTTTGTACACCACCATAGGGCTATTGGTGAATTGCATGATCAATGTATTTGTCCTTGTCAATCTTTGTCTCAAGGCTGTGTTCTTTGGGGAGTTGTATCCTTCTGAAACTCGTAAACTGATTGAACGTCTCATTAATTATGTCATTTACAAGGGGACATTTCTACCACTGATTGTGCCACCAACAATTTATCAGGCAGGTCTTTGGTCAACTTGGTTGACTGTTCTTTGTTCTTTAAAGATGTTTCAAGCTCTGGCTAGAGACCGTTTGGAGCGGCTGAATGCATCTCCATCTGCTACACCCTGGACGTATCTTCGTGTATATTCAGCATTGTTATTCATTTTTTCGGTTGATGTCATCTGGATAAGGCTTTGTCTGGCGTTATATAGAATACATGGGTCCTCCATGTTTCTGCTACTATTCTTTGAGCCTTTAAGTATTGCTTTTGAGACCCTACAGGCCATTTTGGTACATGGATTTCAGTTGCTTGACATATGGCTTCATCATTCAGCTTGCAACATCAGTGATTACCAAATGCCTAAACTGCTTGACTCATTAACCAAAGGTTCATTATCGGAGTGGAAGGGAATTCTTATCCGGAACTTGGGATTTTTCCTGGACATGGCAACATTTTTTATGGTGCTTGGTCATTACTTGTACATATGGCGGCTTCATGGCATGGCTTTCCATCTTGTAGATGCAGTGCTATTTCTAAATATACGTGCATTGCTTAGTGCTATAATAAATTGCATAAAAGGATTTGCCAGGCTAAGGATAGCTTTAGGAACTCTTCATGCAGCTCTTCCTGATGCAACAACTGAGGAGCTCAGAGCATATGATGATGAATGTGCTATTTGTAGAGAACCCATGGCTAAGGCTAAAAAGCTAAACTGCAATCACCTCTTCCATCTTGCATGTTTGAGATCTTGGTTGGACCAAGGCCTGACTGAGATGTATACTTGTCCAACATGTCGAAAGCCACTTTTTGCAGGCCGGCCTGAAAATGAAACAAACTCCAGTACAGGAGTAATATCTAGTGATGAGCAACTTGCACGCCAAATGAGTGCAGGATTTGATCGGCCAAACTCTGCCAGACATACCATGCCTGCAGGATTGTATCCAAATCAGACTCTAAACAATGCCGAAGGTGTTCCTTGGAGGGGTGCAGGGCTGGACTCAACTTGGTTGCATTCTTGGCCAAATCAAGGTGTTGATGGAGCTGGTCCATCTACTGCTATCAGAACAGTTGGGTTGGGAAGAGTTCAAATGATGATGAGGCATCTTGCATCTGTTGGAGAAACTTATGCTCAGACCGCCTTTGAAGATTCTGCTTGGAACCTTTGGCCTATTAATCCCTCTCAGGCTTCTGCAAGTGGTTCAACCATTCCTTCCTCTAGTGGAAGATTGCCTGGAGGAACTGGTAGTTTACACATAAGGACTCCTTCACGTTCTGCAAATGATACTGTAGCAAATATACTAGCTATGGCTGAGACTGTTCGGGAGGTTCTGCCTCATATTCCAGATGACATAATATTCCAGGACTTGCAACGGACAAATTCTGTCACAGTTACTGTGAATAATCTTCTCCAAATGTGA 1761 0.427 MALRFIAISAVSTVLSFVGLQFCTDLSLDKLKSDGLIGWNSIHLDNASHDVELPLGLYTTIGLLVNCMINVFVLVNLCLKAVFFGELYPSETRKLIERLINYVIYKGTFLPLIVPPTIYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLFIFSVDVIWIRLCLALYRIHGSSMFLLLFFEPLSIAFETLQAILVHGFQLLDIWLHHSACNISDYQMPKLLDSLTKGSLSEWKGILIRNLGFFLDMATFFMVLGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIINCIKGFARLRIALGTLHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFAGRPENETNSSTGVISSDEQLARQMSAGFDRPNSARHTMPAGLYPNQTLNNAEGVPWRGAGLDSTWLHSWPNQGVDGAGPSTAIRTVGLGRVQMMMRHLASVGETYAQTAFEDSAWNLWPINPSQASASGSTIPSSSGRLPGGTGSLHIRTPSRSANDTVANILAMAETVREVLPHIPDDIIFQDLQRTNSVTVTVNNLLQM* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02105 586 ProSiteProfiles CUE domain profile. 546 586 IPR003892 GO:0043130
Rops7g02105 586 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 7 586 - -
Rops7g02105 586 FunFam E3 ubiquitin protein ligase RIN2 311 390 - -
Rops7g02105 586 Pfam Ring finger domain 336 380 IPR001841 -
Rops7g02105 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 388 IPR013083 -
Rops7g02105 586 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Rops7g02105 586 Pfam CUE domain 550 586 IPR003892 GO:0043130
Rops7g02105 586 Gene3D - 545 585 - -
Rops7g02105 586 SMART ring_2 338 379 IPR001841 -
Rops7g02105 586 SUPERFAMILY RING/U-box 325 386 - -
Rops7g02105 586 CDD CUE_RIN3_plant 547 584 IPR035667 -
Rops7g02105 586 MobiDBLite consensus disorder prediction 511 536 - -
Rops7g02105 586 FunFam E3 ubiquitin protein ligase RIN2 545 585 - -
Rops7g02105 586 CDD RING-H2_AMFR 336 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02105 Rops-Chr7 35140198 35148399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02105 57 397 C3H Transcription Factor Family AT3G16090 27.374 3.94e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02105 K10636 - gmx:100819656 1043.49