Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02070 ATGGACCTGACGGCAAACCATGCTCCTGTCCTTACTGATAAAAGATCGTTAACAAGGACAAGGTCAAGGCTTGGTGTGCCTACCAATCAGTTACCTTGCTCTCCTAAAGGGGCAACCATTTCGCATTGTCCCTCACTGACAATTCCTAGGAAGAAGATAGGAATCCTTGATGATGTTCGCTTTAATGGTTGGCTGGATGCCATGAAATCATCTTCTCCTACACATAAGAAAATATCAAAGGATGTTGTTGGCCATGGAATTGCATCTTCTGATGCTGAAGCGGCTTATTTTACCTGGCAGCTAGAGTTTCCATCAGCCCTTGCATCTTTTGAGCAAATTACTAACTGTGCAAAAGGCAAGAGAATAGCATTGTTTCTGGATTATGATGGGACTCTTTCACCAATTGTGGACAATCCTGACCATGCTTTCATGTCAGACAGTATGCGGGAAGCTGTTAAAAACGTGGCAGAATATTTTCCGACAGCAATAATTAGTGGAAGAAGTCGTGACAAGGTGTATGAATTTGTTGGAGTAACAGAACTCTATTATGCTGGTAGTCATGGAATGGACATTATTGGTCCTCCTAGACAATCTGTATCTGATAATGACCCTAATTGCATTAGGTCTACTAACAAGCAGGGTAATGAAGTTAATTTATTCCAACCTGCTGCTGAATTCTTGCCAATGATTGATGAGGTACGTAGGTTGTTCATCGAGTGTACAAAAGACATTAAAGGAGCAAAAGTTGAGAACAACAAATTTTGTGTCTCTGTACATTACCGTAATGTAGATGAGAAGAGTTGGGATATGGTTGGACAACGTGTTTATGATGTTCTTAAGGACTATCCACGTTTACGATTAACTCATGGCCGGAAGGTTTTAGAGGTCCGGCCAGTGATTGACTGGGATAAGGGAAAGGCTGTAACATTTTTGCTTGAGTCACTTGGACTTAACGATGGTGATGATGTGCTAGCCATATATGTTGGAGACGATCGTACAGATGAAGATGCATTTAAGGTTTTGAGAGAAGTTAACAAAGGTTGTGGCATCTTAGTGTCCTCCGCCCCAAAGGATAGCAATGCAATTTACTCTCTTCGTGATCCTTCAGAGGTTATGGAATTTCTCAAGTCACTTGTGGCATGGAAATCAAGCTCGCTATAA 1161 0.4152 MDLTANHAPVLTDKRSLTRTRSRLGVPTNQLPCSPKGATISHCPSLTIPRKKIGILDDVRFNGWLDAMKSSSPTHKKISKDVVGHGIASSDAEAAYFTWQLEFPSALASFEQITNCAKGKRIALFLDYDGTLSPIVDNPDHAFMSDSMREAVKNVAEYFPTAIISGRSRDKVYEFVGVTELYYAGSHGMDIIGPPRQSVSDNDPNCIRSTNKQGNEVNLFQPAAEFLPMIDEVRRLFIECTKDIKGAKVENNKFCVSVHYRNVDEKSWDMVGQRVYDVLKDYPRLRLTHGRKVLEVRPVIDWDKGKAVTFLLESLGLNDGDDVLAIYVGDDRTDEDAFKVLREVNKGCGILVSSAPKDSNAIYSLRDPSEVMEFLKSLVAWKSSSL* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02070 386 FunFam Trehalose 6-phosphate phosphatase 229 386 - -
Rops7g02070 386 Gene3D - 224 385 IPR023214 -
Rops7g02070 386 Gene3D - 122 213 IPR023214 -
Rops7g02070 386 Pfam Trehalose-phosphatase 125 369 IPR003337 GO:0003824|GO:0005992
Rops7g02070 386 NCBIfam trehalose-phosphatase 119 379 IPR003337 GO:0003824|GO:0005992
Rops7g02070 386 CDD HAD_TPP 123 373 - -
Rops7g02070 386 NCBIfam HAD-IIB family hydrolase 124 342 IPR006379 -
Rops7g02070 386 SUPERFAMILY HAD-like 123 381 IPR036412 -
Rops7g02070 386 FunFam Trehalose 6-phosphate phosphatase 223 299 - -
Rops7g02070 386 FunFam Trehalose 6-phosphate phosphatase 122 212 - -
Rops7g02070 386 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 34 385 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02070 Rops-Chr7 34594832 34599498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02070 118 378 Trehalose Biosynthesis Gene Families AT1G70290 26.259 2.48e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02070 K01087 - gmx:100783008 608.216