Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02061 ATGAATAATTTTTCTCATGTTCCCCCCGGCTTTAGGTTCCATCCCACGGATGAAGAACTTGTTGATTACTACCTCAGGAAGAAAGTTACTTCAAGGAGAATAGACCTTGATGTCATAAAAGATGTTGACCTTTATAAAATTGAGCCATGGGATCTTCAAGAGCTTTGCAGAATAGGAACAGAAGAGCAAAATGATTGGTACTTCTTTAGTCATAAAGATAAGAAGTATCCAACAGGAACTCGTACAAATAGAGCAACGGCAGCAGGTTTTTGGAAAGCAACTGGAAGAGACAAAGCAATATATTCAAAGCATGACTTGATAGGGATGAGGAAAACCTTGGTCTTCTATAAAGGTCGTGCCCCAAATGGACAAAAATCAGATTGGATCATGCATGAGTATCGGCTTGAAACAGATGAAAATGGCACACCACAGGAAGAAGGATGGGTTGTCTGTAGAGTATTCAAAAAGAGACTAACAGCCATGAATAAAATGAATGAGCATGATTCTCCCTGTTGGTATGATGACCAAGTCTCTTTCATGCAAGACTTAGACTCACCAAAGCAAAACTCTCAACCAAATTTAGCCTACCAATTCCAATATCCTTGCAAGAAAGAGCTAGATTTGTCATACCATTTGCCCCTCCAGCTTCCATTGGACAACCAAAAACTGCTTCAATCTGCTTCAACCATAAACTCCAATACAATGGCAGCATATGGTATAGAAGAAAACCAGGCCACTCCTTCAATCATACAACAAGCTCAACAGATTAGTCATCAAAATTTTCAAGCAATGGTTGTAAACAATAACAATGAACAAGCACTTGAGCAAGTGGCCGATTGGAGAGCTTTTGACAAGTACGTGGCTTCACAACTTAGTCAAGAAGATGTAACCAAAGACAATAGCTACTCAAATTCAGGCAACATCTTACATGTGAAGAATAATAGCAATGTACATTTCAGGGACTTGGATAAGCAAAAAATGATGCCTGAAAATGCCTCAACATCAAACTCCAGTGGTCCAATGGACATGTGGAAATAG 1038 0.3931 MNNFSHVPPGFRFHPTDEELVDYYLRKKVTSRRIDLDVIKDVDLYKIEPWDLQELCRIGTEEQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRLTAMNKMNEHDSPCWYDDQVSFMQDLDSPKQNSQPNLAYQFQYPCKKELDLSYHLPLQLPLDNQKLLQSASTINSNTMAAYGIEENQATPSIIQQAQQISHQNFQAMVVNNNNEQALEQVADWRAFDKYVASQLSQEDVTKDNSYSNSGNILHVKNNSNVHFRDLDKQKMMPENASTSNSSGPMDMWK* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02061 345 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Rops7g02061 345 MobiDBLite consensus disorder prediction 328 345 - -
Rops7g02061 345 MobiDBLite consensus disorder prediction 322 345 - -
Rops7g02061 345 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Rops7g02061 345 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Rops7g02061 345 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Rops7g02061 345 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 288 - -
Rops7g02061 345 FunFam NAC domain-containing protein 16 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02061 Rops-Chr7 34418902 34421134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02061 1 345 NAC Transcription Factor Family AT1G12260 54.881 1.08e-134 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops7g02061 NAM 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02061 - - gmx:100775867 574.318