Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02060 ATGGCAATCGTGGGAAAGACATTCCTCACAGTCCTATTATTATCATCAGTTTTCTCAATAGCTTCATCAAGAAGAGAACCTTCCTCCAGCAACATAGATTGGTGGTGCAACCTAACCCCACACCCTGAGCCATGCAAACACTACACAACTCAAATGAACCCCCATTTCAGAATCAAACACAAAACTGAATTCCGGGGAATGCTTGTTCAACTGGCCTTAAAACAAGCCCTCATCATGCAAAGGGAAGCAAATGATTATCAACAAAATTTGGTCATTGAAAAGCACAAAACAATACATGGTGATTGTTTGAAGCTGTATGAAAACACCATCTTTCATCTCAATCGTACCCTTGAAGGTCTTAATGTGAAGAGGGGTTGTTCTCCTGTTGATGCACAAACTTGGCTAACCACTGCTATCACAAACATTGAAACCTGTAGAACTGGGGCTGAAGAACTCAGTGCTCAAGATTTAATGGTGCCAACTTGCAATGTAACTGAGATGATAAGGAACAGTTTAGCCATAAATATGGATTTCCTGAAACAAAAGGCAGCTAATCACACAGCAGAAGCAGAAGAGGAATATCCCAGTTGGTTTTCAAGGCATGAGAGGAAACTGTTGCAGTCTTCTTCTATAAAGGCACATCTTGTGGTAGCAAAAGATGGTTCAGGGCATTTCAAGACTGTCCAAGATGCTCTGAATGCAGCTGCAAAGAGAAGATATAAGACGAGGTTTGTGATACGCGTGAAGAAAGGGGTATATAGAGAGAACATTGAGGTTGCAATGGAGAATGATAACATCATGATGGTTGGTGATGGGATGCAAAATACCATAATAACGAGTAGTAGAAGTGTTCAAGATGGTTTCACCACTTATAGCTCTGCCACTGCAGTAAGAGAAGTTATTAAGTGCTTGCAGAATAAGACATCTGTTAAGGCCGCACCAGACCTCAAGCCTGTTGTTGACAAATACAACACCTTCTTGGGCAGGCCATGGCAGCAATACTCAAGAGTGGTGATCATGAAAACTTTCATTGACAACTTGGTGAGCCCATTGGGTTGGTCTCCATGGGATGATACTAATTTTGCTCAAGACACACTGTATTATGGAGAGTATGAGAATTCTGGGCCTGGTTCATCTACAGACAAAAGAGTAAAATGGCCTGGTTATCATGTGATAACAAGCCCAAATGAGGCAGCGCAATTCACAGTCACTGGACTCCTTGCTGGCCCCACATGGTTGCCTGCCACAACTGTACCATTTACCTCTGGCCTTTGA 1275 0.4251 MAIVGKTFLTVLLLSSVFSIASSRREPSSSNIDWWCNLTPHPEPCKHYTTQMNPHFRIKHKTEFRGMLVQLALKQALIMQREANDYQQNLVIEKHKTIHGDCLKLYENTIFHLNRTLEGLNVKRGCSPVDAQTWLTTAITNIETCRTGAEELSAQDLMVPTCNVTEMIRNSLAINMDFLKQKAANHTAEAEEEYPSWFSRHERKLLQSSSIKAHLVVAKDGSGHFKTVQDALNAAAKRRYKTRFVIRVKKGVYRENIEVAMENDNIMMVGDGMQNTIITSSRSVQDGFTTYSSATAVREVIKCLQNKTSVKAAPDLKPVVDKYNTFLGRPWQQYSRVVIMKTFIDNLVSPLGWSPWDDTNFAQDTLYYGEYENSGPGSSTDKRVKWPGYHVITSPNEAAQFTVTGLLAGPTWLPATTVPFTSGL* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02060 424 Gene3D - 207 302 IPR012334 -
Rops7g02060 424 Gene3D - 303 424 IPR012334 -
Rops7g02060 424 Pfam Plant invertase/pectin methylesterase inhibitor 31 174 IPR006501 GO:0004857
Rops7g02060 424 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 178 IPR035513 -
Rops7g02060 424 NCBIfam pectinesterase inhibitor domain 8 175 IPR006501 GO:0004857
Rops7g02060 424 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 175 IPR035513 -
Rops7g02060 424 SUPERFAMILY Pectin lyase-like 210 423 IPR011050 -
Rops7g02060 424 PANTHER PECTINESTERASE 17 296 - -
Rops7g02060 424 SMART PMEI_2 27 174 IPR006501 GO:0004857
Rops7g02060 424 Pfam Pectinesterase 215 297 IPR000070 GO:0030599|GO:0042545
Rops7g02060 424 Pfam Pectinesterase 307 409 IPR000070 GO:0030599|GO:0042545
Rops7g02060 424 CDD PMEI-like_3 34 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02060 Rops-Chr7 34403536 34405652 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02060 306 424 Carbohydrate Esterase AT3G47400 62.500 2.53e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02060 K01051 - gmx:100806133 405.601