Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02058 ATGGCAATCGTGGGAAAGACATTCCTCACAGTCTTATTATTATCATCAGTTTTCTCAATAGCTACATCAAGAAGAGAACCTTCCTCAAGCAACATAGATTGGTGGTGCAACCTAACCCCACACCCTGAGCCATGCAAACACTACACAACTCAAATGAACCCCCATTTCAGAATCAAACACAAAACTGAATTCCGGGGAATACTTCTTCAATTGGCCTTAAAACAAGCCATCATCATGCAAAGGGAAGCACATGATTATCAACAAAAAATGGTGATTGAAAAGCACAGAACAATACATGGAGATTGTTTGAAGCTGTATGAAAACACCATCTTTCATCTCAATCGTACCCTTGAAGGTCTTAATGTGAAGAGGGGTTGTTCTCCAGTTGATGCACAAACTTGGCTCACCACTGCTCTCACAAACATTCAAACCTGTAGAACCGGGGCTTTTGAACTCAATGCTCAACAAGATTTCATGGTGCCAACTTGGAGCAACAATGTAACTGAGATGATAAGGAACAGCTTAGCCATCAATGTGGATTTCCTGAAACATAACACAGCTAATCACACAGCAGAAGCGGAAGAGGAATTTCCCAGTTGGTTTTCAAGGCATGAGAGGAAACTGCTGCAGTCTTCTTCCACAAAGGCACATCTTGTGGTAGCAAAAGATGGCTCAGGGCATTTCAAGACTGTCCAAGATGCTCTGAATGCAGCTGCAAAGAGAAGATATAAGACGAGGGCCGCACCAGACCTCAAGCCTGTTGTTGACAAATACAACACATTCTTGGGCAGGCCATGGCAGCAATACTCAAGAGTGGTGATCATGAAAACTTTCATTGACAACTTGGTGAGCCCATTGGGTTGGTCTCCATGGGATGATACTGATTTTGCTCAGGACACTTTGTATTATGGAGAGTATGAGAATTCTGGACCTGGTTCATCTACAAACAAAAGAGTAAAATGGCCTGGGTTTCATGTAATAACAAGTCCAAAAGAGGCAGCGCAATTCACAGTTACGGGACTCCTTGCTGGCCCCACCTGGTTGCCTACCACCACTGTGCCATTTACCTCTGGCTTATGA 1080 0.4361 MAIVGKTFLTVLLLSSVFSIATSRREPSSSNIDWWCNLTPHPEPCKHYTTQMNPHFRIKHKTEFRGILLQLALKQAIIMQREAHDYQQKMVIEKHRTIHGDCLKLYENTIFHLNRTLEGLNVKRGCSPVDAQTWLTTALTNIQTCRTGAFELNAQQDFMVPTWSNNVTEMIRNSLAINVDFLKHNTANHTAEAEEEFPSWFSRHERKLLQSSSTKAHLVVAKDGSGHFKTVQDALNAAAKRRYKTRAAPDLKPVVDKYNTFLGRPWQQYSRVVIMKTFIDNLVSPLGWSPWDDTDFAQDTLYYGEYENSGPGSSTNKRVKWPGFHVITSPKEAAQFTVTGLLAGPTWLPTTTVPFTSGL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02058 359 SMART PMEI_2 27 177 IPR006501 GO:0004857
Rops7g02058 359 Pfam Pectinesterase 246 344 IPR000070 GO:0030599|GO:0042545
Rops7g02058 359 Pfam Plant invertase/pectin methylesterase inhibitor 31 177 IPR006501 GO:0004857
Rops7g02058 359 CDD PMEI-like_3 34 178 - -
Rops7g02058 359 Gene3D - 241 359 IPR012334 -
Rops7g02058 359 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 181 IPR035513 -
Rops7g02058 359 SUPERFAMILY Pectin lyase-like 247 358 IPR011050 -
Rops7g02058 359 PANTHER PECTINESTERASE 17 243 - -
Rops7g02058 359 SUPERFAMILY Pectin lyase-like 213 241 IPR011050 -
Rops7g02058 359 NCBIfam pectinesterase inhibitor domain 8 178 IPR006501 GO:0004857
Rops7g02058 359 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 178 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02058 Rops-Chr7 34310396 34315124 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02058 247 359 Carbohydrate Esterase AT3G47400 64.912 6.40e-45 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02058 K01051 - gmx:100806133 309.301