Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02044 ATGAAGAGGAGAGTCACCACTAATCTTTATGATTTTTTTACTTTTCCGGCAGCGGTTGATGATGGAGTTGCTACCGGCAAACCATTTAGGAACTGTGTTCGACACTTCCTCTTTAACTATGCGTACCTCATCTTTTCCAAGTCAGCTTTAACCTCCCTGATGATGTGGCGGATCTTGTTCAAGGTTGAATCTCTCGTAAACGGCTTGAATTTGTCTCCAACAACAATCACCATGGACATCATTGAGGAAAACGTGACTCGATCTCGAAACTCAATCTACTGCAACCATTGTCGAGTTGTTGGGTGGAGTGGACATCCGGTGTGTCGTAAGCGATATCATTTTATAATAAGGGCCGACTCAAGTAATTTCATTCAACCTTATCAACAACGGTGCTCAAGATGTGACAATCTTGTTCAGTTATGTGAACCAAGGTGTGAATGGTGTAACCATGAAACTATTGGTGATGACTTTGAAGATTGGATGTATCTTCAAACTAAGGATAACACTCATCTTCTGCATAGTGTTGTTCACGCAAATGGTTATGGTCACTTGCTCACTCTCAATGGAAGAGAAGGTGGTTCAATCCTTCTGTCAGGACATAATATTATGGACTTCTGGGATAGGCTTTGTGACACACTATCTATTAGGAAGGTTAGTGTAATGGACTTTTCTAGAAAGTTTGGGCTGGAATACCGATTGCTTCATGCAGTCACGAACGGTTGCTCCTGGTTTGGCAATTGGGGCTATGAATTTGGTATTGGCAGCTATGCTCTTACTCAAGATGCTTATCAGAAAGCAGTGCATACCTTATCAAACATGCCCTTGTCCGCTTTCTTTTTCCATGGTCGGAGGCCTCGAAACCGCCTGCAATGTGTCATTTCTCTTTATCAATCTTTGGCAGTTACCGAGCTTCTTACTATTAAGGATCTCTTCTCCTTTTTGATTGCATTGATTCGGCAATTCCACAAGCCCCTGATCACTAGAACATCTGAACAGCATGAACGCACCAGCACTTCCAATGCTTTGTGTGCTTGGACAAGTAATGATGTTAAAGATGTGCAAAATGCTTTCATCAAAGTGTTGCTTGCTTCAGGTGCCTGCAGTGAGGAGAAATGGGTGAGTTGGCGTGCTCTCAAGGGTGCAGTATGCAGGAAGTTTGTATCTCCTGAGCTTGTAAATTATAGTCTCAAGCACTTAGGAGGGAAAACAACTGACAATGGCATGGTAGTTCTTTCACGATACAATCCCATTTCTAGTGCGGTGGAGTTCAGGCTTGAACTATCAAGCAATATGCAAAATGGATTTGATGCAATCTCAAGCTATCCACCAGAAGAGCAAATAATATCTGATCTTAGATTTTTATTTGCTTCAATTATTCACCATGACAAAATGGTGAGCAACAGATCTCCAATTATGAAGAAATTGGTGGCTGATTCAACTAGGAAGCTCCTAGATTGCAAGCTATTTATAAAAGATTACAAGCCTAAACAAGTGGTAGCAGAAATGCCTCCTTCCATTAGGCTGTGGTGTACTGTGGAGCTCTCTGATCGGCCTAAAGGTTATCCATCCCCACCTCCTGAGCTAATCATCTTGCCTTGGAATGCTACTGTTGCTGACCTCAAGAGGGAAGCAACTAGTGTTTTTCAAGAAGTGTATGTGATGTATAAGAGATTTCAAGCTGAGAAACTTCCAGAATTTGGACCAATCAGTGATTTTTTCACCTTAAAATTCCTGCTTGGTACTAGTGGGTCTGTCCGAATTCAAGGTAAATGCCTAGCCAAACAGTGGTTAAACCGTTTTCGAATGGAAAGAGGAACTGAGACATGGGAAGTTGATTGCATTTGTGGGGCTAAGGATGATGATGGAGAAAGAATGTTAGCATGTGATATATGTGGTGTTTGGCTGCATACTAGATGTGCTGGGATTAATGACTCTGATGATATTCCTTCAGAGTTTGTGTGTTTGAGATGCCTCAACTCCTACCCTATGGAAGCCAAAGAACTACAAGACTCTGATGGGGAAGCTAACAAGACATGTAAATCCAACACAGCCTGCTGA 2058 0.4203 MKRRVTTNLYDFFTFPAAVDDGVATGKPFRNCVRHFLFNYAYLIFSKSALTSLMMWRILFKVESLVNGLNLSPTTITMDIIEENVTRSRNSIYCNHCRVVGWSGHPVCRKRYHFIIRADSSNFIQPYQQRCSRCDNLVQLCEPRCEWCNHETIGDDFEDWMYLQTKDNTHLLHSVVHANGYGHLLTLNGREGGSILLSGHNIMDFWDRLCDTLSIRKVSVMDFSRKFGLEYRLLHAVTNGCSWFGNWGYEFGIGSYALTQDAYQKAVHTLSNMPLSAFFFHGRRPRNRLQCVISLYQSLAVTELLTIKDLFSFLIALIRQFHKPLITRTSEQHERTSTSNALCAWTSNDVKDVQNAFIKVLLASGACSEEKWVSWRALKGAVCRKFVSPELVNYSLKHLGGKTTDNGMVVLSRYNPISSAVEFRLELSSNMQNGFDAISSYPPEEQIISDLRFLFASIIHHDKMVSNRSPIMKKLVADSTRKLLDCKLFIKDYKPKQVVAEMPPSIRLWCTVELSDRPKGYPSPPPELIILPWNATVADLKREATSVFQEVYVMYKRFQAEKLPEFGPISDFFTLKFLLGTSGSVRIQGKCLAKQWLNRFRMERGTETWEVDCICGAKDDDGERMLACDICGVWLHTRCAGINDSDDIPSEFVCLRCLNSYPMEAKELQDSDGEANKTCKSNTAC* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02044 685 SMART PHD_3 612 658 IPR001965 -
Rops7g02044 685 ProSitePatterns Zinc finger PHD-type signature. 613 657 IPR019786 -
Rops7g02044 685 CDD PHD_MMD1_like 612 657 - -
Rops7g02044 685 SUPERFAMILY FYVE/PHD zinc finger 601 660 IPR011011 -
Rops7g02044 685 ProSiteProfiles Zinc finger PHD-type profile. 610 660 IPR019787 -
Rops7g02044 685 Pfam PHD-finger 613 659 IPR019787 -
Rops7g02044 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 598 662 IPR013083 -
Rops7g02044 685 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 4 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02044 Rops-Chr7 34145168 34148720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02044 70 657 PHD Transcription Factor Family AT5G22260 29.725 1.24e-84 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops7g02044 PHD 9e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02044 K26271 - gmx:100780558 926.776