Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02022 ATGACAAGTAACAACACAGTTACACAGCAACAACAACAACAGCTTCAGAATCAGAAGAATCAAAGTGAGAGTTCAAATGGAAAATCCTCACTCACACCCACAAACCCTTATCCTTCACCAACCGCTCTATACCAGGACCTTGTTCATGATGCAAATCTCTTCTGGGAAAAGTTTCAATCTTTTCACAAATCATTTGGTACCAAATTTAAGGTTCCTACTATTGGAGGAAAGCCACTAGATCTACATTGCCTTTTCATAGAAGTAACATCTCGTGGTGGTCTTGAAAAGGTGATTGTAGATCGTAAATGGAAGGATGTGATTATGGCCTTCAAGTTCCGAGATACAATAACAAGCGCGTCATTTATGGTGCGCAAGTACTATCTATCATTGCTTTATCATTTTGAGCAAGTGTATTATTTTCGGAAGCAAGGCCCTCCTTCCTTGACACCTGATACTGTGAGTAGGAGCCTTGCAAATAGCTCCACAACCAATAGGGAAGGTGCTGCTATTAATGATTCACCTGTTCAGGTTAGTCCAGCACAGACACTTGGTTCTCTGGTGCCGGGAACAATTGATGGGAAATTTGATGGAGGATATTTAGTTACAGTGAACCTGGGTTCTGAACAGCTGAAAGGTATCCTGTATCATGTTCCTAACAATGTGTCCCAGAGTTCTAATGCTGAAGGCACGCCTAGTTCACAGAATCGAAAGAGATCAAAATTGGCATTACGTGATCCATCTCGACCGAAGTCAAACAGGAGTGGTTACAATTTCTTCTTTGCTGAGAATTATGCCAGGTTAAAGCCCTCATTTTATGGGCAAGAGAGAGCAATTAGTAAGAGGATTGGGTTTCTATGGAGCAATCTGACAGAAGCAGAAAGACAGGTTTATCAAGAGAAAGGGCTGAGAGATAAGGAAAGATACAGGACTGAAATGTTGGAATACAAATCCAATAATTCAACTCCTCAGTAG 972 0.4115 MTSNNTVTQQQQQQLQNQKNQSESSNGKSSLTPTNPYPSPTALYQDLVHDANLFWEKFQSFHKSFGTKFKVPTIGGKPLDLHCLFIEVTSRGGLEKVIVDRKWKDVIMAFKFRDTITSASFMVRKYYLSLLYHFEQVYYFRKQGPPSLTPDTVSRSLANSSTTNREGAAINDSPVQVSPAQTLGSLVPGTIDGKFDGGYLVTVNLGSEQLKGILYHVPNNVSQSSNAEGTPSSQNRKRSKLALRDPSRPKSNRSGYNFFFAENYARLKPSFYGQERAISKRIGFLWSNLTEAERQVYQEKGLRDKERYRTEMLEYKSNNSTPQ* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02022 323 CDD HMG-box_AtHMGB9-like 249 315 - -
Rops7g02022 323 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 321 - -
Rops7g02022 323 SMART ARID_2 45 135 - -
Rops7g02022 323 Pfam HMG (high mobility group) box 249 316 IPR009071 -
Rops7g02022 323 SUPERFAMILY HMG-box 240 319 IPR036910 -
Rops7g02022 323 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 249 316 IPR009071 -
Rops7g02022 323 ProSiteProfiles ARID domain profile. 48 139 IPR001606 GO:0003677
Rops7g02022 323 SMART bright_3 49 140 IPR001606 GO:0003677
Rops7g02022 323 MobiDBLite consensus disorder prediction 221 237 - -
Rops7g02022 323 SUPERFAMILY ARID-like 47 148 IPR036431 GO:0003677
Rops7g02022 323 SMART hmgende2 248 317 IPR009071 -
Rops7g02022 323 MobiDBLite consensus disorder prediction 221 250 - -
Rops7g02022 323 Gene3D - 44 152 IPR036431 GO:0003677
Rops7g02022 323 MobiDBLite consensus disorder prediction 148 174 - -
Rops7g02022 323 Pfam ARID/BRIGHT DNA binding domain 52 135 IPR001606 GO:0003677
Rops7g02022 323 MobiDBLite consensus disorder prediction 1 35 - -
Rops7g02022 323 CDD ARID_HMGB9-like 50 135 IPR045303 GO:0003677
Rops7g02022 323 Gene3D High mobility group box domain 232 323 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02022 Rops-Chr7 33760829 33765119 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02022 28 321 ARID Transcription Factor Family AT3G13350 52.903 3.39e-109 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Rops7g02022 ARID 4.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02022 - - lja:Lj3g3v1933050.2 474.937