Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g02015 ATGTCTATGGTGTTGTTGAGGAAAGTGTGGGGAATGGTTTCAGGACGCAACAACCCATCATCAGGAGAAGAAGTGGTTCGTGCTGATATGGGTGCTTTTGAGCAACTACCCTGTGACTTGTTATTGCAAATTTTGTGGCTTTTGGGTCCCAAAGAAGCTGCAAAATTGAGCCGTGTTTGCAAGGCTTTGAGATCACTGGTTTCTGATAAAAGACTCTGGCTGAGGTTCCTTAAGACCCATCAGGCTGAACCCTCTTGGGATTCTGTTTTCTTTGCTGAGACTACTTTGGCTTCTGGCTACCCTCTTCCATCCTTCACTGGCCAGAGGCCACAGCCGTCATTCAAGCATATTTATGGCCAGAGAGCACAAGTTCCTGGTGCTATTATCATCGATGGTGGTTCTGGCTATTGCAAATTTGGCTGGAGCAAGTACTCTTGTCCATCGGGGCGATTGGCAACATTTTCGGAATTTGGTAACATTGAGTCACCAATGTATACTAGACTTCGACATTTTTTTGCAACTATTTATAACAGCAGGATGCAGGTGAAACCGAATAAACAACCAGTTATTGTTTCTTTACCAATATGCCATTATGATGATACTGAATCAGCCAAAGCATCAAGACGACAACTTAAAGAAGCAATTTATGCTTCCCTGTTTGACATGAATGTTCCTGCTGTTTGTGCTGTCAACCAGGCAACTCTAGCTCTTTATGCTGCGAAACGAACTTCTGGAATAGCTGTTAACATAGGTTTTCAAGTCACGTCAGTAGTTCCAATTTTAAATGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGACTGGGAGCACTGAAACTTACAGGATTTCTCAAGGAGAAGATGCAAATGAACAACCAACGTTTTCAATCTCTGTACACCGTTCGCACACTGAAAGAGAAGCTATGCTATGTTGCTCTTGATTATGAAGCTGAGCTATCAAAAGATACACAAGCATCATATAAAGCTGTAGGAGAAGGATGGTTCACACTTTCAAAAGAGCGGTTTCAGACAGCAGAGATCTTATTCCAGCCACATCTTGCCGGAGTGCAAGCCATGGGTCTGCATCAGGCCATAGCTCTTTGTATGGACCATTGCCATTCTGCTGAACTACCACGTGACAGTGACTGGTACAAGACTGTAGTTTTATCAGGGGGTACTGCATGCTTACCAGGTTTGGCAGAAAGGATAGAGAAGGAACTCCATGACTTCCTTCCTCCATACATATCCAATGGAATTAGAGTTATACCTCCTCCATATGGTGCAGATACTCCATGGTTTGGAGCAAAGATTATTGGCAATTTGAGCACCTTTCCTGGTCCTTGGTGTGTAGCAAAAAAGCAGTTCCGTCATAAGCCTAGGCTCAACCTCATATGGGAACTGCAGCTGGGGGGCACTAGTTTACTGCATCCTGTTGGAAAAGAAGGTGTGACACCTCTTGCAAATAACATTGTGAATTTAGCAACTCATGTTGAGAGGAGGCTGACTATGGGAAAGATAGGATACGAGAGAGTGAAAGAGAGGTATTTACATAGAATCACAGTGGTTCTAAAGGGAGTGTTACAGATGGGTAGCCAGCCACAATTAAATTATCCAGCTTAG 1623 0.4375 MSMVLLRKVWGMVSGRNNPSSGEEVVRADMGAFEQLPCDLLLQILWLLGPKEAAKLSRVCKALRSLVSDKRLWLRFLKTHQAEPSWDSVFFAETTLASGYPLPSFTGQRPQPSFKHIYGQRAQVPGAIIIDGGSGYCKFGWSKYSCPSGRLATFSEFGNIESPMYTRLRHFFATIYNSRMQVKPNKQPVIVSLPICHYDDTESAKASRRQLKEAIYASLFDMNVPAVCAVNQATLALYAAKRTSGIAVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLKEKMQMNNQRFQSLYTVRTLKEKLCYVALDYEAELSKDTQASYKAVGEGWFTLSKERFQTAEILFQPHLAGVQAMGLHQAIALCMDHCHSAELPRDSDWYKTVVLSGGTACLPGLAERIEKELHDFLPPYISNGIRVIPPPYGADTPWFGAKIIGNLSTFPGPWCVAKKQFRHKPRLNLIWELQLGGTSLLHPVGKEGVTPLANNIVNLATHVERRLTMGKIGYERVKERYLHRITVVLKGVLQMGSQPQLNYPA* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g02015 540 Gene3D - 24 100 - -
Rops7g02015 540 SMART actin_3 125 456 IPR004000 -
Rops7g02015 540 ProSiteProfiles F-box domain profile. 30 76 IPR001810 GO:0005515
Rops7g02015 540 SUPERFAMILY Actin-like ATPase domain 126 248 IPR043129 -
Rops7g02015 540 Pfam Actin 173 455 IPR004000 -
Rops7g02015 540 SUPERFAMILY F-box domain 24 88 IPR036047 GO:0005515
Rops7g02015 540 PANTHER ACTIN 166 455 IPR004000 -
Rops7g02015 540 Gene3D - 166 457 - -
Rops7g02015 540 SUPERFAMILY Actin-like ATPase domain 242 450 IPR043129 -
Rops7g02015 540 Gene3D - 233 431 - -
Rops7g02015 540 Pfam F-box-like 34 75 IPR001810 GO:0005515
Rops7g02015 540 CDD NBD_sugar-kinase_HSP70_actin 128 273 - -
Rops7g02015 540 SMART fbox_2 36 76 IPR001810 GO:0005515
Rops7g02015 540 Gene3D Actin; Chain A, domain 4 276 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g02015 Rops-Chr7 33598670 33610243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g02015 174 456 Cytoskeleton Gene Families AT3G12110 33.559 1.86e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g02015 K16616 - gmx:100791973 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g02015 7 33598670 33610243 Rops7g02015 7 33598670 33610243 ECH