Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01992 ATGATTTTCAATTTCGCTGTCAAGAGGAGCCTGCAAGTTCTTGAAAAGAAGATGCATACCCAATTGTATATTTGCACTGCACCTTACTTTCGTTCTGATGAGTGCAAGAAATTTGCCAAGGTCCACAAGGTGTTTGGAGCCAGCAATGTGAGCAAGATCCTCATTGAAGTTCCAGAGGAGCAGAGGGAAGACACGGTGAATGCACTGGCTTATGAGGCTGAAGCAAGGCTTAGAGACCCAGTTTATGGTTGCATAGGTGCCATAGCACTGTTGCAAAGGAAGATGGTGGATGATTTCATTCAAATCCCATATATATTTTGA 321 0.433 MIFNFAVKRSLQVLEKKMHTQLYICTAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNALAYEAEARLRDPVYGCIGAIALLQRKMVDDFIQIPYIF* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01992 106 Pfam Lateral organ boundaries (LOB) domain 26 95 IPR004883 -
Rops7g01992 106 ProSiteProfiles LOB domain profile. 8 106 IPR004883 -
Rops7g01992 106 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 26 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01992 Rops-Chr7 33200001 33200686 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01992 27 97 AS2 family AT3G11090 77.465 7.85e-36 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops7g01992 LOB 5.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01992 - - gmx:100791250 141.354