Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01987 ATGGAGAGGGAGGAAGGTCCTCCAGTGAACGATCTATGTTCAGTGTGCCATAGCAACTTCCAAAATCCATGCCAAGCAAATTGCTCTCATTGGTTCTGTGCCAATTGCATAATGCTTGTGTGGCAACACGCATCTGGGGTTCAACCTTGTAAGTGCCCCCTTTGTCGCCGACCCATTACCCTTTTGGTTCCAACTGAGGATTCATTGAGGCACCGTGATGACCCTGAAGTTGCTCAGATTCTTTCAAAGATTCAAACTTATAATCGTTTCTTTGGTGCCCATCCAACCAGTACCCTTCAAAGATTGCAAGATCTTCCCTTTTTGTTGTCAAGGCTTGTTAGGGAATTCTCTGACCCTCAAAGATCGCTCCCTCTTGTCATCAAGGCTCGTGTCTATGTTGCTATGATACTGAGTATTGTATATGTGTTCAGTCCTATTGACATCATTCCTGAAGGGATATTGGGAGTAGTTGGTTTATTGGATGATCTTCTAATTGTTCTCATCTTCTTCTTGCATGTTGCTGCACTTTATAGATCAGTGCTTTACCTTCGTCATGGGGGTTCTTCCTAA 570 0.4386 MEREEGPPVNDLCSVCHSNFQNPCQANCSHWFCANCIMLVWQHASGVQPCKCPLCRRPITLLVPTEDSLRHRDDPEVAQILSKIQTYNRFFGAHPTSTLQRLQDLPFLLSRLVREFSDPQRSLPLVIKARVYVAMILSIVYVFSPIDIIPEGILGVVGLLDDLLIVLIFFLHVAALYRSVLYLRHGGSS* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01987 189 ProSiteProfiles Zinc finger RING-type profile. 13 56 IPR001841 -
Rops7g01987 189 SMART ring_2 13 55 IPR001841 -
Rops7g01987 189 SUPERFAMILY RING/U-box 10 64 - -
Rops7g01987 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 105 IPR013083 -
Rops7g01987 189 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Rops7g01987 189 PANTHER UNCHARACTERIZED 3 185 IPR038896 GO:0061630
Rops7g01987 189 Pfam Protein of unknown function (DUF1232) 133 167 IPR010652 -
Rops7g01987 189 CDD RING-HC_RNF113A_B 7 64 - -
Rops7g01987 189 Pfam Zinc finger, C3HC4 type (RING finger) 10 60 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01987 38 188 C3H Transcription Factor Family AT1G72175 71.523 8.39e-67 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01987 K15707 - jre:109000985 284.648