Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01973 ATGCAGCCTCGCCGGAGAAGTTGCGTCCGGCCATCGGCGGCGGAGAGAGAAAGGAAACATTTTCTGAAGGCCATACTTCCGCCACCCATTCATGCCGAACAAATGAGAATTCCTGAGAATTTTATAACAAGATTTGGGGATGAACTATCCAATGTTGCTGAAATTACTGTTCCAGATGGTTGTGTTTGGAAAATGGGATTGAAGAAATGTGGTAAAGATGTTCTGTTTTGCAACAATTGGAAAGAGTTTTCAGAATACTATTCTATCAGTTATGGTCACTTCCTAGTTTTCAAATATGAAGGGAATTCACAATTTAATGTTGTTATATTTGATGCTACTTCTACTGAGATTTGCTACCCCTGCAAAACTGAGGGTACTAATGGAGAACCAAATTTGGACAATAACATTCACCCTAAGTGTCCTATGAAAAGGTCCAGGGTTGATCATCAGCACATAAGAAGCAAAAAGCATAGGGTGGAGAATGAGAGTGATTCAGATGGTGAAGGAAAATCAAGGAAGAAAGAAAGGTTTTCTTGTCATGGGAAACTAGTCAAAAGCCCATGTAATCAAAACCACACTAGTAGAATGTCCAACTCTGCTTCCAAAAGAGCAAGGGATGCTGCCAATAAGTTCAAGCCAAAAAACCCTTCTTTCACTTCAACCATTAACCTTGTTAATGTGTATTTGCCTTCTGAATTTTCTGCAAAGTATCTGAAGCCAAAGGTTCCTATGAAGCTCCAAAATTCTAATGGAGAGCAGTGGGTTGTTTCTTGCATACATCATAAGTTGAGATCAATGCGTATGCCTTGTCGGAGTAGGTGTGTCCGGCCATCGGCGGAGAGAGAACCGAAGCATTTTCTGAAGGCCATCCTACCCTCACCCATTCATGCCCACCAAATAAGAATTCCTGAGAATTTTATAACAAGATTTGGGGATGAACTATCCAAAGTTGCTGAAATTACTGTTCCAGATGGTTGTTTATGGAAAATGGGATTGAAGAAATGTGGTAAAGATGTTTTCTTTTGCAACAATTGGAAGGAGTTTGCAGAATACTATTCTATCAGTTATGGTCACTTCCTAGTTTTCAAATATGAAGGGAATTCACAATTTAATGTTGTTATATTTGATGCTACTTCTACTGAGATTTGCTATCCATGCAAAACTGGGGGTACTAGTGGAGAACTAAGCTTGGACAATAACACGCACCCTAAACGTTATAGCCTTCAGACAAGAATCAAAGAGCATAGGGAGGAAAATGAGATAGAAATAAGTGATGCAGATGATCAGGACAAACCAAGAAAGAAAGAAAGGTCTTCTTGTCATGGGAAACAAGTCAAAAGCCGAGGTAATCAAAACCACACTAGTAGGATGTCTAACTCTGCTTCTGAGAGAGCAAAAGATGCTGCCAACAAGTTCAAGACAAAAGAACCTTCTTTTACTTCAACCATTAGGCTTCTTCGTGTGTATGTTCCTGCTGAATTTGCTTCAAAATATCTCAGGCCAAAGGCTCCAATGAAGCTCCAAAATTCTAATGGAGAGCAGTGGGTTGTTTCTTGTGTATGTCATACAGGCAGATCAATGTATATGTGGAAGGGATGGGCTAAATTTGCAAGAGACAACTCACTGTCAGATGGAGATTCTTGTGTGTTTGAGTTGATTAAGAGGAAGCCGGTTGTGCTGAAAGTTAAAGTGTTTAGTGCTGTTGAATATGGCAATTCACGTAGGCACTGA 1731 0.3998 MQPRRRSCVRPSAAERERKHFLKAILPPPIHAEQMRIPENFITRFGDELSNVAEITVPDGCVWKMGLKKCGKDVLFCNNWKEFSEYYSISYGHFLVFKYEGNSQFNVVIFDATSTEICYPCKTEGTNGEPNLDNNIHPKCPMKRSRVDHQHIRSKKHRVENESDSDGEGKSRKKERFSCHGKLVKSPCNQNHTSRMSNSASKRARDAANKFKPKNPSFTSTINLVNVYLPSEFSAKYLKPKVPMKLQNSNGEQWVVSCIHHKLRSMRMPCRSRCVRPSAEREPKHFLKAILPSPIHAHQIRIPENFITRFGDELSKVAEITVPDGCLWKMGLKKCGKDVFFCNNWKEFAEYYSISYGHFLVFKYEGNSQFNVVIFDATSTEICYPCKTGGTSGELSLDNNTHPKRYSLQTRIKEHREENEIEISDADDQDKPRKKERSSCHGKQVKSRGNQNHTSRMSNSASERAKDAANKFKTKEPSFTSTIRLLRVYVPAEFASKYLRPKAPMKLQNSNGEQWVVSCVCHTGRSMYMWKGWAKFARDNSLSDGDSCVFELIKRKPVVLKVKVFSAVEYGNSRRH* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01973 576 MobiDBLite consensus disorder prediction 411 437 - -
Rops7g01973 576 Pfam B3 DNA binding domain 286 377 IPR003340 GO:0003677
Rops7g01973 576 Pfam B3 DNA binding domain 483 567 IPR003340 GO:0003677
Rops7g01973 576 Pfam B3 DNA binding domain 21 112 IPR003340 GO:0003677
Rops7g01973 576 SUPERFAMILY DNA-binding pseudobarrel domain 280 377 IPR015300 -
Rops7g01973 576 CDD B3_DNA 284 376 IPR003340 GO:0003677
Rops7g01973 576 SUPERFAMILY DNA-binding pseudobarrel domain 15 112 IPR015300 -
Rops7g01973 576 Gene3D - 457 571 IPR015300 -
Rops7g01973 576 Gene3D - 196 273 IPR015300 -
Rops7g01973 576 MobiDBLite consensus disorder prediction 130 178 - -
Rops7g01973 576 MobiDBLite consensus disorder prediction 154 175 - -
Rops7g01973 576 MobiDBLite consensus disorder prediction 444 465 - -
Rops7g01973 576 CDD B3_DNA 19 111 IPR003340 GO:0003677
Rops7g01973 576 ProSiteProfiles B3 DNA-binding domain profile. 285 378 IPR003340 GO:0003677
Rops7g01973 576 CDD B3_DNA 487 566 IPR003340 GO:0003677
Rops7g01973 576 MobiDBLite consensus disorder prediction 184 202 - -
Rops7g01973 576 ProSiteProfiles B3 DNA-binding domain profile. 473 568 IPR003340 GO:0003677
Rops7g01973 576 SMART B3_2 21 113 IPR003340 GO:0003677
Rops7g01973 576 SMART B3_2 286 378 IPR003340 GO:0003677
Rops7g01973 576 SMART B3_2 479 568 IPR003340 GO:0003677
Rops7g01973 576 Gene3D - 278 379 IPR015300 -
Rops7g01973 576 Gene3D - 12 114 IPR015300 -
Rops7g01973 576 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Rops7g01973 576 MobiDBLite consensus disorder prediction 411 473 - -
Rops7g01973 576 SUPERFAMILY DNA-binding pseudobarrel domain 477 565 IPR015300 -
Rops7g01973 576 MobiDBLite consensus disorder prediction 183 202 - -
Rops7g01973 576 PANTHER B3 DOMAIN-CONTAINING 278 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01973 Rops-Chr7 32788165 32797950 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01973 286 565 B3 DNA Binding Superfamily AT3G18990 31.378 5.81e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops7g01973 B3 1.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01973 - - mtr:25488444 426.402