Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01954 ATGGACAACAAGGGGGTGCCACCTAGCCTCTTCGTTAATGATGGTTCATTCATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGAAAAAGGGAAGAATGTCAAATTAGAGGATTCTAAACCAATTAAAGTTATTTCCGGGTCTATGTTTCCTAATCCCTCCATTAGTAAAACGTCTGTGGACATGAAGGCTAGTGATGCCTGGAAAGCATCCCAGGCTGGTTCCGGTGGCAAGCTAGCTTTCAGTTTAAAACAAAAGTCAAAGCTGGTGCCACCACCTGTTAAGTTCAGTGCTGATGAGGATGAAGAAGAAATAGATGATGGGAATGTTTCAAATGATGCACCACTGAAACGGCAAAAGTTAGGCCAGGAGGATGGTGCTGAGCAATCATCAAGACAACTTGATGTTGCTTATTCCTCAACACCTCCTTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTGGCGAGTTTTGTGGCTAAAAATGGAAGGAAATTTGAGGACGTTACACGTCAAAAGAATCCTGGGGATACACCTTTCAATTTTTTATTTGATGAGAGATGTGCTGACTACAAGTATTATGAATATCGGCTTGCTCAAGAAGAAAAGGCTCTTGTGCAGTCCAGGGAATCACAGGCACCTCGTAATGGGGGTACAAGCACTTCTTCCATTCAGATAAATGGTCCTCAAAGAACATCTCAGCAACATACAGCCTACCAAATCCCTGCATCTGCTTTATATGAAAGTGCTGACAATTCAAGGGCTTCTGGATCTTCAATTCAAACATTATCAGCAGGAAGCATTGATGAGCCCAATGTTTCATCAAATGCTGATTCTTTAGCATTAATGGAGTTCTACATGAAGAAAGCTGCACGGGAAGAGAGGTTTAAACAACCTAAGCAGTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCTAGGGGAAAAAGGCCATCATATGGGTGATTTTATTCCGCCAGAAGAACTAAATAAGTTCTTGGCTAGCTGTAATGATGCTGCAGCACAGAGAGCTGCAAGGGAGGTTGCAGAGAAGGCTAAAATTCAGGCTGATAATGTAGGTCACAAGCTCTTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGCAGCTCTAGGAAGGGTATTTCAGATCCTATCATGGCTGGCGATGTTAAGAAGAATAACTTGGGGGTTGGTGCTCATGAACCTGGGGAGGTTACTACTGATGACGACCTATACGAGCAGTACAAAAAGCGGATGATGCTTGGCTACCGTTACAGACCAAATCCTCTGAACAATCCTCGCAAGTCTTATTATTGA 1326 0.4359 MDNKGVPPSLFVNDGSFMERFKQLQQEQEKGKNVKLEDSKPIKVISGSMFPNPSISKTSVDMKASDAWKASQAGSGGKLAFSLKQKSKLVPPPVKFSADEDEEEIDDGNVSNDAPLKRQKLGQEDGAEQSSRQLDVAYSSTPPSPSDPTVKKVADKLASFVAKNGRKFEDVTRQKNPGDTPFNFLFDERCADYKYYEYRLAQEEKALVQSRESQAPRNGGTSTSSIQINGPQRTSQQHTAYQIPASALYESADNSRASGSSIQTLSAGSIDEPNVSSNADSLALMEFYMKKAAREERFKQPKQSKDEMPPPASLLGEKGHHMGDFIPPEELNKFLASCNDAAAQRAAREVAEKAKIQADNVGHKLLSKMGWKEGEGLGSSRKGISDPIMAGDVKKNNLGVGAHEPGEVTTDDDLYEQYKKRMMLGYRYRPNPLNNPRKSYY* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01954 441 Gene3D Surp module 137 209 IPR035967 GO:0003723|GO:0006396
Rops7g01954 441 MobiDBLite consensus disorder prediction 126 147 - -
Rops7g01954 441 Pfam Surp module 152 202 IPR000061 GO:0003723|GO:0006396
Rops7g01954 441 MobiDBLite consensus disorder prediction 207 239 - -
Rops7g01954 441 Pfam G-patch domain 359 402 IPR000467 GO:0003676
Rops7g01954 441 ProSiteProfiles G-patch domain profile. 358 405 IPR000467 GO:0003676
Rops7g01954 441 ProSiteProfiles SURP motif repeat profile. 153 196 IPR000061 GO:0003723|GO:0006396
Rops7g01954 441 SMART surpneu2 151 205 IPR000061 GO:0003723|GO:0006396
Rops7g01954 441 SMART G-patch_5 356 403 IPR000467 GO:0003676
Rops7g01954 441 MobiDBLite consensus disorder prediction 81 152 - -
Rops7g01954 441 MobiDBLite consensus disorder prediction 110 125 - -
Rops7g01954 441 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 317 441 IPR040169 -
Rops7g01954 441 SUPERFAMILY Surp module (SWAP domain) 140 204 IPR035967 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01954 Rops-Chr7 32388197 32395666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01954 354 410 C2H2 Transcription Factor Family AT5G26610 45.614 1.13e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01954 K13096 - gmx:100786213 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01954 7 32388197 32395666 Rops7g01954 7 32388197 32395666 ECH