Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01950 ATGGTTCGCTCCAATGGCGTCAAGCTCCTTCGATCTTTGCCCTCAAAACTCCTCCGTGACGCCAATAAATCTATATATGAAGGAGTGTGCCAAAGGGGTTATATGACATTGAATTCAGGACTTTGTAATCCATCCAGAGTTACAGGAAGTTTTTCTCCAAACGTTGGAGACGGCGTTAATTTGAAGAACTGGATGCTATTGGGAGCAGCAAATACATTTTGGGGGGCATCTAGATCCATTCATGGCTCAGCTTCATTGGCAAGGGACTATTATGACGTGCTTGGTGTGAGTAAGAATGCAAGTTCTTCTGAAATAAAGAAAGCATACTATGGGCTTGCAAAGAAGCTCCATCCAGACACTAACAAAGATGATCCTGAGGCTGAAAAGAAGTTTCAAGAAGTTTCAATGGCATATGAGGTTTTGAAGGATGAAGAAAAGCGTCAACAGTATGATCAGGTTGGCCATGATGATTACGTAAACCAACAAAGCGCTGGTTTTGGAGCAGGCGGCGGTGGCTTTAATCCATTTGAGCAGATATTCCGTGATCATGATTTTGTCAAGAGCTTTTTTCATCAGAATATTGGTGGAGAGGATGTCAAGACTTTCATTGAACTATCATTTATGGAAGCTGTCCAAGGATGCACCAAAACTGTTACATTTCAAACAGATTTGCTTTGTAACACTTGTGGTGGAAGTGGGGTTCCTCCTGGTACAAGACCTGAAACCTGCAAGCGCTGTAAGGGGTCGGGAGTGACATTTGTACAAGCTGGCATATTTAGGATGGAGAGTACATGTGGTACATGTAAGGGAACTGGCAAGATTGTATCGAATTTCTGCAAGTCATGCAGGGGTGCAAAGGTTATCAAAGGAACAAAGTCGGTCAAGTTGGATATTATGCCTGGGATGGACAACAACGAAACCATAAAGGTTTACAGAAGTGGTGGTGCAGATCCTGATGGAGATCACCCTGGTGATCTTTATGTTACTATCAAGGTCAGGGAAGATCCTGTCTTCCGTAGAGAAGGATCTGATATTCATGTAGATGCTGTTTTAAGTATCAGCCAGGCAATTTTGGGCGGAACCATTCAGGTCCCAACTCTTACTGGAGATGTTGTTCTTAAGGTACGTTCTGGCACCCAACCCGGTCAGAAGGTGGTTCTGAAAAAGAAAGGGATCAAGACAAAAAATTCTTACACGTTTGGAGATCAATATGTTCATTTTAACGTCAGCATCCCAACAAACCTGACAGAGAGACAGCGTGAGTTGATCGAAGAGTTTGCCAAGGAAGAGCAAGGGGAGTTTGATAAACAGAGAGCTGCTTCTGCTTCTGGTTGA 1335 0.4337 MVRSNGVKLLRSLPSKLLRDANKSIYEGVCQRGYMTLNSGLCNPSRVTGSFSPNVGDGVNLKNWMLLGAANTFWGASRSIHGSASLARDYYDVLGVSKNASSSEIKKAYYGLAKKLHPDTNKDDPEAEKKFQEVSMAYEVLKDEEKRQQYDQVGHDDYVNQQSAGFGAGGGGFNPFEQIFRDHDFVKSFFHQNIGGEDVKTFIELSFMEAVQGCTKTVTFQTDLLCNTCGGSGVPPGTRPETCKRCKGSGVTFVQAGIFRMESTCGTCKGTGKIVSNFCKSCRGAKVIKGTKSVKLDIMPGMDNNETIKVYRSGGADPDGDHPGDLYVTIKVREDPVFRREGSDIHVDAVLSISQAILGGTIQVPTLTGDVVLKVRSGTQPGQKVVLKKKGIKTKNSYTFGDQYVHFNVSIPTNLTERQRELIEEFAKEEQGEFDKQRAASASG* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01950 444 SMART dnaj_3 88 146 IPR001623 -
Rops7g01950 444 Gene3D - 226 286 - -
Rops7g01950 444 SUPERFAMILY Chaperone J-domain 88 191 IPR036869 -
Rops7g01950 444 FunFam Molecular chaperone DnaJ 218 291 - -
Rops7g01950 444 Pfam DnaJ domain 89 151 IPR001623 -
Rops7g01950 444 Pfam DnaJ C terminal domain 202 412 IPR002939 -
Rops7g01950 444 CDD DnaJ_C 197 415 - -
Rops7g01950 444 SUPERFAMILY HSP40/DnaJ peptide-binding domain 337 423 IPR008971 GO:0006457|GO:0051082
Rops7g01950 444 Gene3D - 333 441 - -
Rops7g01950 444 ProSiteProfiles dnaJ domain profile. 89 154 IPR001623 -
Rops7g01950 444 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 213 288 IPR036410 -
Rops7g01950 444 CDD DnaJ 89 143 IPR001623 -
Rops7g01950 444 CDD DnaJ_zf 226 286 IPR001305 GO:0031072|GO:0051082
Rops7g01950 444 ProSitePatterns Nt-dnaJ domain signature. 131 150 IPR018253 -
Rops7g01950 444 PRINTS DnaJ domain signature 91 109 IPR001623 -
Rops7g01950 444 PRINTS DnaJ domain signature 126 146 IPR001623 -
Rops7g01950 444 PRINTS DnaJ domain signature 109 124 IPR001623 -
Rops7g01950 444 PRINTS DnaJ domain signature 146 165 IPR001623 -
Rops7g01950 444 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 55 437 - -
Rops7g01950 444 FunFam Chaperone protein dnaJ GFA2, mitochondrial 86 198 - -
Rops7g01950 444 Gene3D - 199 328 - -
Rops7g01950 444 FunFam Chaperone protein dnaJ 1, mitochondrial 333 439 - -
Rops7g01950 444 Gene3D DnaJ domain 86 198 IPR036869 -
Rops7g01950 444 ProSiteProfiles Zinc finger CR-type profile. 213 291 IPR001305 GO:0031072|GO:0051082
Rops7g01950 444 Pfam DnaJ central domain 226 286 IPR001305 GO:0031072|GO:0051082
Rops7g01950 444 SUPERFAMILY HSP40/DnaJ peptide-binding domain 196 334 IPR008971 GO:0006457|GO:0051082
Rops7g01950 444 Hamap Chaperone protein DnaJ [dnaJ]. 86 440 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01950 Rops-Chr7 32309040 32321156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01950 82 151 C2H2 Transcription Factor Family AT1G74250 42.667 3.65e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01950 K03686 - gmx:100815834 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01950 7 32309040 32321156 Rops7g01950 7 32309040 32321156 ECH