Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01947 ATGGCGCCGAAGAAGCCAAGAACTCCAAGGGTGACGAGGAACCCTGAGTTGATTAGGGGAATTGGAAAGTACTCAAGGTCCCAGATGTACCACAAGAGGGGTCTCTGGGCCATCAAGGCCAAAAACGGCGGCGTTTTCCCCCGTCACGATCCTAAGCCCAAGCCTGAAGCTCCTCCTGCGAAGCCCCCGAAGTTCTACCCAGCCGACGATGTGAAGAAGCCACTTGTTAACAAGAGGAAGCCCAAACCCACAAAACTCAGGGCTAGCATTACTCCAGGGACTGTGCTGATTCTGCTTGCTGGGAGATTTAAGGGAAAGAGGGTTGTTTTCCTGAAACAGCTTCCATCTGGGCTGCTTCTTGTCACAGGTCCTTTTAAGATCAATGGGGTTCCTCTAAGAAGGGTGAACCAATCATATGCCATTGGTACATCCACCAAAGTGGACATCTCGGGTGTTAATGTTGATAAATTTGATGACAAGTACTTTACTAAGGAAGCTCAGAAAAAGAAAAAGAAGGGAGAAGGAGAGTTCTTTGAGGCAGACAAGGAGGAGAAAAATGTGCTTCCACAAGAAAAGAAAGACGACCAGAAAACAGTGGACACTGCTTTATTAAAAGCCATTGAGAGTGTTCCGGACCTGAAGTCTTACTTGGGTGCTAGGTTTTCTTTGAAGGCAGGAATGAAGCCTCATGAGCTAGTCTTCTAG 705 0.4766 MAPKKPRTPRVTRNPELIRGIGKYSRSQMYHKRGLWAIKAKNGGVFPRHDPKPKPEAPPAKPPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYAIGTSTKVDISGVNVDKFDDKYFTKEAQKKKKKGEGEFFEADKEEKNVLPQEKKDDQKTVDTALLKAIESVPDLKSYLGARFSLKAGMKPHELVF* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01947 234 Pfam Ribosomal protein L6, N-terminal domain 3 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
Rops7g01947 234 Gene3D - 88 172 IPR014722 -
Rops7g01947 234 Pfam Ribosomal protein L6e 127 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Rops7g01947 234 PANTHER 60S RIBOSOMAL PROTEIN L6 5 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Rops7g01947 234 FunFam 60S ribosomal protein L6 88 172 - -
Rops7g01947 234 MobiDBLite consensus disorder prediction 41 86 - -
Rops7g01947 234 SUPERFAMILY Translation proteins SH3-like domain 88 174 IPR008991 -
Rops7g01947 234 CDD KOW_RPL6 82 234 IPR041997 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01947 Rops-Chr7 32272099 32274458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01947 3 234 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 83.190 1.32e-125 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01947 K02934 - gmx:100784101 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01947 7 32272099 32274458 Rops7g01947 7 32272099 32274458 ECH