Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01945 ATGGCTACTCTCTACTCTTCTCTATCTCTACTCTCACCACCCAATCTTCTCTCCCTCACATCAACTTCAAGTTATTCCACTCACACCACGTTGAACTTGAGACCCACAACTACCCTTCTGAAACTGGTTCCTTCCACCACGCGCCGTTTTCGGAGACCCTTTGCGGTGGCTGAACAAGCTACGGTTGCTGACCCTAAATCTGAGGCTGCAAGGAGACTCTACGTTGGTAACATTCCACGCACCCTCACCAACGATGAACTTGCAAAAATTGTTGAAGAGCATGGTGCTGTTGAGAAAACTGAGGTTATGTATGATAAATACTCTGGAAGGGGCCGTCGCTTTGCATTTGTTACAATGAAAACTGTTGAGGATGCAAATGCAGCAATCGAGAAACTTAATGGCACTGAAGTTGGAGGGCGTGAGATTAAAGTAAATATAACTGAAAAACCTTTAGCAACAGTAGATTCGCCTTTACTCCAGGGAAAAGTTCTTGGTGCCAAGGTTTCCCGGGTTCCTGGGACCTCAAAATCCACTGGCTTTGGTTTTGTTACTTTTTCCTCAGATGAGGATGTAGAAGCTGCAATCTCGTCTTTGAACAATGCTTTGTTAGAAGGGCAAAAAATTCGTGTGAATAAGGCATAG 642 0.447 MATLYSSLSLLSPPNLLSLTSTSSYSTHTTLNLRPTTTLLKLVPSTTRRFRRPFAVAEQATVADPKSEAARRLYVGNIPRTLTNDELAKIVEEHGAVEKTEVMYDKYSGRGRRFAFVTMKTVEDANAAIEKLNGTEVGGREIKVNITEKPLATVDSPLLQGKVLGAKVSRVPGTSKSTGFGFVTFSSDEDVEAAISSLNNALLEGQKIRVNKA* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01945 213 Gene3D - 52 149 IPR012677 -
Rops7g01945 213 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 149 IPR000504 GO:0003723
Rops7g01945 213 FunFam 30S ribosomal protein 2, chloroplastic 52 151 - -
Rops7g01945 213 PANTHER OS02G0815200 PROTEIN 160 212 - -
Rops7g01945 213 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 213 IPR000504 GO:0003723
Rops7g01945 213 SMART rrm1_1 72 145 IPR000504 GO:0003723
Rops7g01945 213 SMART rrm1_1 150 211 IPR000504 GO:0003723
Rops7g01945 213 SUPERFAMILY RNA-binding domain, RBD 70 212 IPR035979 GO:0003676
Rops7g01945 213 Gene3D - 150 213 IPR012677 -
Rops7g01945 213 CDD RRM1_PSRP2_like 72 151 - -
Rops7g01945 213 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 143 IPR000504 GO:0003723
Rops7g01945 213 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 209 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01945 Rops-Chr7 32246677 32249783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01945 61 213 Eukaryotic Initiation Factors Gene Family AT1G49760 25.556 4.64e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01945 K13126 - sind:105168752 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01945 7 32246677 32249783 Rops7g01945 7 32246677 32249783 ECH