Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01938 ATGACTTCTCAGCTGTTGAGCAGCTCTTGGAGGATGACAAAGGAGAGATGGCAGCAGTGTTCCTCGAACCTATTGTTGAAAACTCCGTTTTTCATTGCTCCTAAAGATGCTTTCCTTGCTAATTTTGCTCAGCAACTATCTCTTAAGGGGTTTGCTGGGGACACAGCCAAGGCTCATGCAAAGACAAGCATGATCGCAGGAGAGGGTGTTAGCAACATCAGAACATTTGCAACATTCGATGCACAAAACAAGATGTTGTCCATCTTTTGCCATGAGCTACGTGTCCCTCAGAGTCGTAGCCTGCACCGGAGCCAAACTTCCGGCCTCTTGTTTGGCCTCTCTCAGCTTGCACTTTATGCCTCTGAAGCTCTTATTCTATGGTATGGTGCACATTTGGTTAGCGAAGGTGTTTCCACCTTGTCAAAAGTCATCAAGGTGTTTGAGGTCCTAGTGATCACAGCAAGTTCAGTGGCAGAAACTGTTAGCTTTGCACCGGAGATAATCCGTGGTGGTCAGAGTCAAGCTCTTGCTGGGGCAAGTGGATCAGGGAAGAGTTCAGTTGTTGCATTGATAGAGCGTTTCTATGATCCAATTGCTGGTAAAGTGATGGTAGATGGAAAGGACATAAGGAAGTTGAATTTGAAGTCTTTGAGGCTTAAGATTGGGTTGGTGCAACAAGAGCCAGCGCTTTTTGTAGCTAGCATCTTTAAGAATATTGCATATGGCAAGGAAGGTGCAACTGAAGTTGAGGTAATTGAAGCTGCACGTGCAGCCAATGTGCATGGATTTGTGAGTAGTTTACCTGAGGGTTACAAGACTCCAGTTGGTGAAAGAGGTGCGCAACTCTCTGGTGGACAAAAGCAAAGGATTGCTATTGCTAGAGCTATTCTCAAGGACCCCACAATTCTTCAACTTGATGAGGCCGCAAGTGCACTTGATGCTGAATCCGAATGTGTCCTACAAGAAGCATTGGAAAGGCTAATGAGGGGGCCTCCACCTAAGGTTGAACTGAAGAAGCTACCACCCTCACGTGCAAAATCTCCAAAGCTGGGCCGGCGAAAGAGCAACAGTGGTGCAGTTAATTTATCTGAAGGGAAGAAGGATGAAGGGGCTGTTACTCAGAGAAAGCATCACGCACTTAGACCAACAAGTTAG 1155 0.4641 MTSQLLSSSWRMTKERWQQCSSNLLLKTPFFIAPKDAFLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTFATFDAQNKMLSIFCHELRVPQSRSLHRSQTSGLLFGLSQLALYASEALILWYGAHLVSEGVSTLSKVIKVFEVLVITASSVAETVSFAPEIIRGGQSQALAGASGSGKSSVVALIERFYDPIAGKVMVDGKDIRKLNLKSLRLKIGLVQQEPALFVASIFKNIAYGKEGATEVEVIEAARAANVHGFVSSLPEGYKTPVGERGAQLSGGQKQRIAIARAILKDPTILQLDEAASALDAESECVLQEALERLMRGPPPKVELKKLPPSRAKSPKLGRRKSNSGAVNLSEGKKDEGAVTQRKHHALRPTS* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01938 384 Gene3D ABC transporter type 1, transmembrane domain 28 171 IPR036640 GO:0005524|GO:0016020
Rops7g01938 384 MobiDBLite consensus disorder prediction 330 384 - -
Rops7g01938 384 Pfam ABC transporter 169 309 IPR003439 GO:0005524
Rops7g01938 384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 330 IPR027417 -
Rops7g01938 384 SMART AAA_5 170 383 IPR003593 GO:0016887
Rops7g01938 384 Gene3D - 172 330 IPR027417 -
Rops7g01938 384 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 169 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops7g01938 384 Pfam ABC transporter transmembrane region 48 154 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops7g01938 384 SUPERFAMILY ABC transporter transmembrane region 42 295 IPR036640 GO:0005524|GO:0016020
Rops7g01938 384 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 144 383 IPR003439 GO:0005524
Rops7g01938 384 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 24 169 IPR039421 -
Rops7g01938 384 ProSitePatterns ABC transporters family signature. 282 296 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01938 Rops-Chr7 32142295 32144032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01938 44 344 Calmodulin-binding Proteins AT2G36910 39.669 1.99e-69 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01938 K05658 - fve:101296590 431.024