Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01933 ATGAAAATAGCCAAAGCTCTTTCCCTTCTCTACCTCTTAGGGTCTTTGGCTACCCTTTCAGCTGGTGACACTGAAAGTGCATCATCACCAAGTGTGCATCCAAGTCACTATGCTGCAGCATTCAATAGGAGCCTTTTTCCTTCTGATTTTCTATTTGGAATAGGCTCTTCAGCTTACCAGGTAGAAGGAGCAGCAAATATAGATGGGAGGGGACCAAGTATATGGGACACCTTCACTAAACAGCATCCAGAAAAGATATGGGATCATAGTACTGGTGGTGTCTCTGTTGATTTTTATCACCGATACAAGAGTGACATAAAGGTGGTGAAAGAAATGGGGTTGGATTCATACAGATTCTCCATCTCATGGTCCAGAATATTCCCCAAGGGCAAGGGAGCAGTCAATCCCTTAGGGGTTAAATTCTACAACAATCTCATCAATGAGATCCTAGCCAATGGCTTAATACCTTTTGTGACTCTCTTTCATTGGGACCTCCCACAAGGTCTTGAAGATGAATATGGAGGATTTCTCAGTCCAAAAATAGCTCATCAAAAAGGAAAGATTGGAATCACCTTAGTGACTCACTATTTTGAACCAAAATCTAAGAGTGTAGCCGATCTCAAGGCTGCAAGTCGAGCTCTGGACTTCTTTTTTGGATGGTTTGGTCATCCCATTACATATGGTGACTATCCCCAGAGTATGAAATCTTCTGTGGGTTATAGACTCCCCAAATTCACAAAAGAACAATCCCAAAGTCTCATAGGTTCCTATGATTTTCTTGGTGTGAATTATTACTCCACATATTTTGCTGAAAGTATTAAACCAACCAGCATCAACAGTACCTTCTACACAGATATGCAAGCCAATGTCAATCCATTGAGGAACGGTGTCGCTATTGGCCCGGCGACTGATTTGAACTGGCTCTACATTTATCCGAAGGGAATTCATCATCTTGTGAAACACATAAAGGATAACTACAAGAATCCACCAATGTACATTACTGAAAATGGTATTGCTGAATCAAGGAATGACTCAATACCAATCAATGTAGCCCGCAAGGATGGTGTCAGGATTAGATACCATAGTGACCATCTCAAATACCTTCTTGAAGCAATCAAAGATGGTGCTAATGTGAAGGGCTACTATGCATGGTCATTTTCTGACAGTTATGAATGGGATGCTGGTTACACAGTTAGATTTGGCCTCATATATGTGGATTACATGAACAATTTGAAAAGATATCCCAAGTACTCTGCTTTTTGGCTGCAAAAATTCCTTCTCAAGTGA 1287 0.4095 MKIAKALSLLYLLGSLATLSAGDTESASSPSVHPSHYAAAFNRSLFPSDFLFGIGSSAYQVEGAANIDGRGPSIWDTFTKQHPEKIWDHSTGGVSVDFYHRYKSDIKVVKEMGLDSYRFSISWSRIFPKGKGAVNPLGVKFYNNLINEILANGLIPFVTLFHWDLPQGLEDEYGGFLSPKIAHQKGKIGITLVTHYFEPKSKSVADLKAASRALDFFFGWFGHPITYGDYPQSMKSSVGYRLPKFTKEQSQSLIGSYDFLGVNYYSTYFAESIKPTSINSTFYTDMQANVNPLRNGVAIGPATDLNWLYIYPKGIHHLVKHIKDNYKNPPMYITENGIAESRNDSIPINVARKDGVRIRYHSDHLKYLLEAIKDGANVKGYYAWSFSDSYEWDAGYTVRFGLIYVDYMNNLKRYPKYSAFWLQKFLLK* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01933 428 PRINTS Glycosyl hydrolase family 1 signature 354 365 IPR001360 GO:0004553|GO:0005975
Rops7g01933 428 PRINTS Glycosyl hydrolase family 1 signature 331 339 IPR001360 GO:0004553|GO:0005975
Rops7g01933 428 PRINTS Glycosyl hydrolase family 1 signature 375 392 IPR001360 GO:0004553|GO:0005975
Rops7g01933 428 PRINTS Glycosyl hydrolase family 1 signature 256 270 IPR001360 GO:0004553|GO:0005975
Rops7g01933 428 PRINTS Glycosyl hydrolase family 1 signature 399 411 IPR001360 GO:0004553|GO:0005975
Rops7g01933 428 ProSitePatterns Glycosyl hydrolases family 1 active site. 331 339 IPR018120 -
Rops7g01933 428 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 50 64 IPR033132 -
Rops7g01933 428 PANTHER GLYCOSYL HYDROLASE 183 426 IPR001360 GO:0004553|GO:0005975
Rops7g01933 428 SUPERFAMILY (Trans)glycosidases 36 426 IPR017853 -
Rops7g01933 428 Gene3D Glycosidases 183 428 - -
Rops7g01933 428 Pfam Glycosyl hydrolase family 1 183 425 IPR001360 GO:0004553|GO:0005975
Rops7g01933 428 Gene3D Glycosidases 26 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01933 Rops-Chr7 32003699 32008210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01933 186 426 Glycoside Hydrolase AT2G44480 46.281 1.75e-78 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01933 K22279 - tcc:18614675 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01933 7 32003699 32008210 Rops3g02313 3 46571568 46586138 PCT