Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01910 ATGGAGCTTGGTTTGAGCTTAGGAGACTCATCAAGACCTTTGGTCGCTTTCATGGATAAGCCTCGTGAAGCTTCTAATAACCTACTGGGGTTAGGCTTCAACACCACCTTATCAATTGGTCCAATCAACAATAAACCAAGAGATCAACAACAACAAGAAGAAGAAGCAAAATCAAAGATGGATAACAACAACAGTCATAGAACTGAAGATCACCATGAAGCCACAAAGCAATATCATAGTCTTTCTCCCAAGACCAACAACAACAACCCTGTACCCCATCAACTTGATCTTCTTCCTCAGCTCTCTTTCCCATGGCCTCCTCCTTCTGAAAATGTGAGTTTATCAACTGAGTTGGGGGGTTCTTCAAGGGGCTTGGACGTGAACGTGCTGCCGCCGGTGACGGCGGCGCCGGAGGATGAGGCGGATGAAGGGGCAGCGCTGTCATCATCTCCTAACAGCGCAGCATCTTCCTTTCAGATGGATCTATGCATATACAACAGAGGAGGAGGTGGTGGTGGTGGTGGAAGTTTGAGTGGTTCAGGTGGAAACTACTACAACGGTGGTGGCAAGAGGGACTTATCTGATGGTGAAGCTTATGACCAAAGGGCTTCTTCAAGAGCAAGTGATGAAGATGATAACGGTGGTGGTGGTGGAAGCACTAGGAAGAAACTCAGGCTCTCTAAGGAACAATCTGCTTTTCTTGAAGAGAGTTTCAAAGAGCACAACACTCTTAACCCTAAACAAAAACTTGCTCTTGCAAAACAACTCAATCTTCGCCCTCGCCAAGTAGAAGTCTGGTTCCAAAATAGAAGAGCAAGGACTAAGTTGAAACAGACAGAAGTGGATTGTGAGTACTTGAAGAGATGCTGTGAGACACTGACTGAAGAGAATAGGAGGCTTCATAAGGAGCTTCAAGAATTGAGGGCTTTGAAGACTTCAAACCCATTCTACATGCAATTACCAGCTACTACCTTGACCATGTGCCCTTCTTGTGAGCGTGTAGCCACAAATTCAACCTCAAATTCCTCTGTTACTCCAAGTGCCACCATCAATGCTAATACAGGAACCATGGCCAGTGCCAAAACCAGTAATGAAAACTCCACCTCTAAAGCCATTGGATTCCCCTTTGGTAAACCCAGGTTTCATCCATTCGTTCACAACAGTCCTCAGCATCTTGAGTTGAATTGA 1188 0.4554 MELGLSLGDSSRPLVAFMDKPREASNNLLGLGFNTTLSIGPINNKPRDQQQQEEEAKSKMDNNNSHRTEDHHEATKQYHSLSPKTNNNNPVPHQLDLLPQLSFPWPPPSENVSLSTELGGSSRGLDVNVLPPVTAAPEDEADEGAALSSSPNSAASSFQMDLCIYNRGGGGGGGGSLSGSGGNYYNGGGKRDLSDGEAYDQRASSRASDEDDNGGGGGSTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNSTSNSSVTPSATINANTGTMASAKTSNENSTSKAIGFPFGKPRFHPFVHNSPQHLELN* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01910 395 FunFam Homeobox-leucine zipper protein 18 204 282 - -
Rops7g01910 395 MobiDBLite consensus disorder prediction 107 122 - -
Rops7g01910 395 MobiDBLite consensus disorder prediction 38 129 - -
Rops7g01910 395 ProSitePatterns 'Homeobox' domain signature. 252 275 IPR017970 GO:0000981|GO:0006355
Rops7g01910 395 ProSiteProfiles 'Homeobox' domain profile. 217 277 IPR001356 GO:0003677
Rops7g01910 395 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 63 350 - -
Rops7g01910 395 MobiDBLite consensus disorder prediction 48 78 - -
Rops7g01910 395 MobiDBLite consensus disorder prediction 193 224 - -
Rops7g01910 395 MobiDBLite consensus disorder prediction 188 224 - -
Rops7g01910 395 MobiDBLite consensus disorder prediction 79 95 - -
Rops7g01910 395 CDD homeodomain 221 278 IPR001356 GO:0003677
Rops7g01910 395 SMART HOX_1 219 281 IPR001356 GO:0003677
Rops7g01910 395 Coils Coil 290 313 - -
Rops7g01910 395 SMART halz 277 320 IPR003106 GO:0006355|GO:0043565
Rops7g01910 395 Pfam Homeobox associated leucine zipper 277 311 IPR003106 GO:0006355|GO:0043565
Rops7g01910 395 SUPERFAMILY Homeodomain-like 206 278 IPR009057 -
Rops7g01910 395 Pfam Homeodomain 221 275 IPR001356 GO:0003677
Rops7g01910 395 Gene3D - 215 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01910 Rops-Chr7 31402205 31404174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01910 123 333 Homeobox Transcription Factor Family AT3G60390 59.259 2.68e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops7g01910 Homeodomain 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01910 K09338 - gmx:100778742 487.648