Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01909 ATGGACAGCGTATGTTCAAAGCAAGAGCAAGCACCCCAATTGGTCATTGCAACAGAAGAAGATTTATCAACAGTATTTCGGACCTTGAAACATTTGAAATATGTTGTTGATGGTGGGATAGACCTGAGAAGAGAACTGAAAGTTGTAATGGAGCTTGACTTGAATCAGGAGCCTTTGGATCAAATAGAAGAGCGTATTAGATGCCTTGAAGGGGTAATTTTCAGGGCTAGGCAGCGTCAGAGGTGGCAACAGGTTCACACTCCAATTCAGATAAGTAACTTTGCAGGAGAATTGGAAACAGCAGCTAATAATGTTCAAGATGAAGGCATGGTGCAGCAGGAAGAGGTTGGTGTTGATGTTGAAGGAGGAATGGTTGAAGGTGGGAAAATAGGTAAAAGAAAAGATGCCTTTTTAGTAGCTAAAGCATTGGGGATTGAAACTTATACTGATGAGGAAGGGGGCTGCACTGGAAAATTATTTGATTGTAATATATGCTTGGACATGGCAAGAGATCCTGTTTTGACTTCTTGTGGTCACTTGTTTTGTTGGCCATGCTTCCATCAATTGTCATATGCTTATTCAAATGCAAAGGAATGTCCTGTTTGTAAAGGAGAAGTTACTGAAACTGGCATCATCCCAATTTATGGCAATGCAAGTGACAATGGTAGTGATCAGTTGGATTTGAAAGAAACTGGTTCAAGAGTCCCTGCTCGACCCCGTGCACCTAGAATTGAGAGTATCAGGCAGCAAATCAGAAACCACAGAGGTGCTTCTACAATCCAGGATATGCTGCAGTTTGGTACCTTTGGTGGATTAGGAGAGCGAGTTCAGATAGAAATCCCTAATACTGCAACAGATATAACTAATGTTTTGGCTGCTCAATCTCTCCTGGAGGCAGAAAATAATCAGCATCCTTCTTCCCATCTATTTTCGAGTTTGTTAGTGCAAGGAGCTGCTTCATTTTCATCTCTTTCATTAGCAATAAATTCTGCAGAAAGATTATATGAGGAACTTGAATCATACATCCATGGTCACCCCTTGGGAAGCATCAGGCAGCTTAGTCCACATGCTGTCAGTAGAGAATCACCATATAGCATTGCTGCTACAAACCAATTAGAGAGTCATACTCAAGGTGTTGCTGCAACCAATTCTGCAACCACATCTTCTGTTTCACCTTTAAGTAGGAATGATGGCAGTAATTTTGTTACAGACACCAATATCCAGACAACTGATAGTAGTATACAGAATATTTCCTCGGACCCGTCATCTTCTAGTAGAACTGATGTTCCAAGATGA 1296 0.412 MDSVCSKQEQAPQLVIATEEDLSTVFRTLKHLKYVVDGGIDLRRELKVVMELDLNQEPLDQIEERIRCLEGVIFRARQRQRWQQVHTPIQISNFAGELETAANNVQDEGMVQQEEVGVDVEGGMVEGGKIGKRKDAFLVAKALGIETYTDEEGGCTGKLFDCNICLDMARDPVLTSCGHLFCWPCFHQLSYAYSNAKECPVCKGEVTETGIIPIYGNASDNGSDQLDLKETGSRVPARPRAPRIESIRQQIRNHRGASTIQDMLQFGTFGGLGERVQIEIPNTATDITNVLAAQSLLEAENNQHPSSHLFSSLLVQGAASFSSLSLAINSAERLYEELESYIHGHPLGSIRQLSPHAVSRESPYSIAATNQLESHTQGVAATNSATTSSVSPLSRNDGSNFVTDTNIQTTDSSIQNISSDPSSSSRTDVPR* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01909 431 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 134 312 IPR045103 GO:0005783|GO:0006511|GO:0061630
Rops7g01909 431 SMART ring_2 162 202 IPR001841 -
Rops7g01909 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 264 IPR013083 -
Rops7g01909 431 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Rops7g01909 431 SUPERFAMILY RING/U-box 159 211 - -
Rops7g01909 431 Coils Coil 59 79 - -
Rops7g01909 431 MobiDBLite consensus disorder prediction 375 431 - -
Rops7g01909 431 Pfam Zinc finger, C3HC4 type (RING finger) 161 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01909 Rops-Chr7 31356799 31360267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01909 126 406 C3H Transcription Factor Family AT3G58030 31.118 4.63e-37 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01909 - - cam:101488454 342.043