Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01889 ATGGCGACGGCGACGGAGGCGGAGCCAGAATTAAAAACATACTGGTGCCACGAATGTGACATGAGCGTGTCTCTAACTCCATCTCCCTCTCCCTCTCCTTCTCCTTCTCCTCTTTTATGTCCCCATTGCCACACTCACTTCTTAGAACTCATGGACTCACCCTTCACCCAAAACGACGTCGAATCATCACCTCTCCCTTCAGCCTTATTCGACGTCGTTTTCCAAGACGCCTTTTCCCTTCTCTCCCCTAAACCCTCCACCAAGACTCGCTCTATTGTTGTTGTCCCTATAATCCCTGTCACCCCTTCACTCCTCTCTCAACTCGACCCCAACGGCGTCGTTTTATGCGCTGTGTGTAAGGACCAAATTGTTGTCGACTCTGAGGCTAAACAGCTTCCCTGTAACCATCTTTATCACTCTGATTGCATTACCCCATGGCTTGAGCTTCGTGGCTCTTGCCCCCTTTGTCGGTTTCAGCTTATAGAGGAAGCTGATGATGAAGAAGAAGAAGAAGAAGAAGGACGTGATGTTTCTGCTATAAGGAGGGAGCTTATGGTGAGGCTGTCGGAGATGACGGAGGATGATTTCTATGGGTTGAGGACTACTCTTAGTCACATTGTTCACCGACATGCTCTCCTTGATTCTAATGCTACTTCAATGAAAAATTCATCATCACGGAATAAGGTATATAGTGTACTAAAATAA 705 0.4723 MATATEAEPELKTYWCHECDMSVSLTPSPSPSPSPSPLLCPHCHTHFLELMDSPFTQNDVESSPLPSALFDVVFQDAFSLLSPKPSTKTRSIVVVPIIPVTPSLLSQLDPNGVVLCAVCKDQIVVDSEAKQLPCNHLYHSDCITPWLELRGSCPLCRFQLIEEADDEEEEEEEGRDVSAIRRELMVRLSEMTEDDFYGLRTTLSHIVHRHALLDSNATSMKNSSSRNKVYSVLK* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01889 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 176 IPR013083 -
Rops7g01889 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 71 160 - -
Rops7g01889 234 Pfam Ring finger domain 116 157 IPR001841 -
Rops7g01889 234 ProSiteProfiles Zinc finger RING-type profile. 116 157 IPR001841 -
Rops7g01889 234 Pfam zinc-ribbon 13 51 IPR039525 GO:0061630
Rops7g01889 234 SUPERFAMILY RING/U-box 111 163 - -
Rops7g01889 234 SMART ring_2 116 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01889 Rops-Chr7 30494317 30496776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01889 7 226 C3H Transcription Factor Family AT3G60080 31.930 5.88e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01889 K11982 - gmx:100775530 271.166