Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01883 ATGACTCCTTCAAAGAAAGATTTCAAGCACACAGAAGCTGAACTGCTTCAATGTTTTCTCTACAATAAGGTTCATGATAAACCTTTGCCTAACGATGTCACCATTATCGAATATGACTTGTATGGTGAAAAGAATCCTTGGGAGATTTGGGAAGAGTTTGGAGGTACTCACTCATATGATGGAAAGGACCTCTACTTCTTCACCATCCTAAAGAAAAAGTCTAACTCACGCTATGTTCGCACCATTGGAATGGGTTCATGGGAAGGTGAAGACGTTGGGAAAGTTATAATGGCCAATAACCAAAAACTAGGCTTAAGGAAACGTTATTGCTTTGAGAAGAGTCACACTGACCAAGATGGTAGATGGATCATGCATGAATACACTCTTGACTCATCTTTGATAAGCAATCCTTCGGCTATTAATTATGTCCTCTGCAGATTTAGAAACAATTTGGGATACAAGCCACATAAAAAAGATACGACAAATACTAAGCAAGAAGATACCAAGGTCAAAAGACAAAAGAAGACCATCGTTCTTGGACTTGCGGCTACCAATGAATTTGACAACAATGATGTTTTGTTGGGGGAAGGACCAAGTGACCATCCAGACACTGAAGACAACACGACCAAGGTGGAAGAAACTACCACAATAACAGAGTCCGAATATAAGGAAGAAGATAAAGATGAAGACGATGGAGAAGAAGATGATGATGATGATCTCCCTATGTCTTGGTCTAAGTTATTTTCGTTGCAGTTAACGGGGTTTGAAGAATGTGAGATCCAAGAAGAAGACATCATTATGCTTCCCAATGAATTTAGCAAGGATTTATTATTGGAAAATATTGATATTGAGTAA 855 0.386 MTPSKKDFKHTEAELLQCFLYNKVHDKPLPNDVTIIEYDLYGEKNPWEIWEEFGGTHSYDGKDLYFFTILKKKSNSRYVRTIGMGSWEGEDVGKVIMANNQKLGLRKRYCFEKSHTDQDGRWIMHEYTLDSSLISNPSAINYVLCRFRNNLGYKPHKKDTTNTKQEDTKVKRQKKTIVLGLAATNEFDNNDVLLGEGPSDHPDTEDNTTKVEETTTITESEYKEEDKDEDDGEEDDDDDLPMSWSKLFSLQLTGFEECEIQEEDIIMLPNEFSKDLLLENIDIE* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01883 284 PANTHER NAC TRANSCRIPTION FACTOR 56 7 207 - -
Rops7g01883 284 ProSiteProfiles NAC domain profile. 2 150 IPR003441 GO:0003677|GO:0006355
Rops7g01883 284 MobiDBLite consensus disorder prediction 223 240 - -
Rops7g01883 284 Pfam No apical meristem (NAM) protein 7 129 IPR003441 GO:0003677|GO:0006355
Rops7g01883 284 Gene3D NAC domain 11 152 IPR036093 GO:0003677|GO:0006355
Rops7g01883 284 MobiDBLite consensus disorder prediction 198 222 - -
Rops7g01883 284 MobiDBLite consensus disorder prediction 189 242 - -
Rops7g01883 284 SUPERFAMILY NAC domain 8 148 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01883 Rops-Chr7 30359098 30361415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01883 3 146 NAC Transcription Factor Family AT5G62380 33.108 1.90e-13 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops7g01883 NAM 2.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01883 - - mtr:11433340 224.557