Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01854 ATGATGCAAGGCAGTGGACAATTAACTGTTCCTCCGGGCTTCAGGTTCCACCCTACAGATGAGGAGCTTCTCTACTATTACCTGAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTCATAAGAGAAGTAGATCTGAACAAACTTGAGCCTTGGGATCTCAAAGATAAATGTAGGATTGGGTCAGGGCCTCAGAATGACTGGTATTTCTTCAGCCACAAGGACAAGAAATACCCAACAGGAACAAGAACAAATAGAGCAACTACAGCTGGTTTTTGGAAAGCAACTGGAAGGGACAAGGCCATATACCACACCAATTCCAAGAGGATAGGCATGAGGAAAACCCTAGTTTTCTACACTGGCCGTGCTCCTCATGGCCAGAAGACTGATTGGATCATGCACGAGTACCGTCTTGATGATGATGATGCTGAGGTTCAGGAAGATGGGTGGGTGGTTTGCAGGGTCTTCAAAAAGAAAAATCAAAATAGAGGTTTTCAACAAGAAATTGAAGAAGAAGAGCACTTGAACCACATGAGAACAAGTGGTCCTTGCCAGATTCTAGAGCCAAAACACCATCTTCAAGGACTCTATGATTGCAGCTTTGATGGGACAATTCACCTGCCACAGTTGTTCAGTCCAGAATCAGCTGTAGCACCCTCTTCCTTGGCCTCATCCATGAATGCCATGGACATCTTTGAGTGCTCTCAAAACTTGTTGAGGCTCACAACTACTAGCCGTGGACTCAATCTCATGCAACAACAAGGGGAGAGATTCAATGGTGACTGGTCATTCTTGGACAAGCTACTAGCATCTCACCATGGCATGGATCAGCATCATCCACAAAGCAAATGTAACCCTCCAACTGAGCATGCTGTAGCTTCTGTTGGGACTTCAGCTCAGAAATTTCCATTTCATTACCTTGGTTGTGAGACCCATGATATTATGAAATTTTCCAAGTAA 963 0.4424 MMQGSGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNDWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDDDAEVQEDGWVVCRVFKKKNQNRGFQQEIEEEEHLNHMRTSGPCQILEPKHHLQGLYDCSFDGTIHLPQLFSPESAVAPSSLASSMNAMDIFECSQNLLRLTTTSRGLNLMQQQGERFNGDWSFLDKLLASHHGMDQHHPQSKCNPPTEHAVASVGTSAQKFPFHYLGCETHDIMKFSK* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01854 320 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
Rops7g01854 320 ProSiteProfiles NAC domain profile. 10 159 IPR003441 GO:0003677|GO:0006355
Rops7g01854 320 FunFam NAC domain-containing protein 19 163 - -
Rops7g01854 320 Gene3D NAC domain 19 164 IPR036093 GO:0003677|GO:0006355
Rops7g01854 320 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 236 - -
Rops7g01854 320 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01854 Rops-Chr7 29736183 29738117 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01854 2 320 NAC Transcription Factor Family AT1G79580 54.090 3.99e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops7g01854 NAM 5.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01854 - - vun:114178728 608.216