Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01838 ATGGCCGCCGCCGAAACCACAGCTCCGCCGCGCCAGCTGTCGCAGAAGGAGGTGGACATTCAGATGATGCTGGCCGCCGACGTTCACCTGGGCACTAAAAACTGCGACTTTCAGATGGAGCGCTACGTCTTCAAGCGCCGCTCTGACGGTATATACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAACTTGCTGCTAGGATTATTGTCACCATTGAGAACCCTCAGGATATCATTGTTCAGTCAGCCAGGCCTTATGGTCAGAGAGCAGTACTTAAGTTTGCTCAATACACTGGTGCTCATGCAATTGCAGGAAGGCACACTCCCGGAACATTCACTAATCAATTGCAGACTTCTTATAATGAGCCTCGCCTTCTCATTCTGACTGATCCAAGAACAGATCATCAGCCCATTAAGGAAGGTGCTCTTGGAAATATACCAACTATTGCTTTTTGTGACACTGATTCTCCAATGCGGTACGTTGACATTGGGATTCCTGCTAATAACAAGGGAAAACATAGCGTTGGTTGTCTCTTTTGGCTATTAGCAAGGATGGTACTGCAGATGAGGGGTACTATTCATCCAGGGCATAAGTGGGACGTAATGGTTGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAAGAGGAAGCACCACCTGCCCAAGATTATGCCATTGCAGACTTTGGTGCTGCGGGTATTGGCAGCTTCCCTGCTGAGGGCCAATGGCCTGCTGCTGCTACACTTGAACAACCCTGGACTCAAGAGGTTCCACAACCAATCCCAGCAGCTCCCAGTAACCGGACCCCAGAAATAGGAGATTGGGGCGAGTCAGTTCCAGCTCCACAAGTTGCTGTGCCTGCAACCCAAACTGTTCCTGCTCCTAGCTGGGATTAG 912 0.4956 MAAAETTAPPRQLSQKEVDIQMMLAADVHLGTKNCDFQMERYVFKRRSDGIYIINLGKTWEKLQLAARIIVTIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSVGCLFWLLARMVLQMRGTIHPGHKWDVMVDLFFYREPEEAKQQEEEEAPPAQDYAIADFGAAGIGSFPAEGQWPAAATLEQPWTQEVPQPIPAAPSNRTPEIGDWGESVPAPQVAVPATQTVPAPSWD* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01838 303 PANTHER 40S RIBOSOMAL PROTEIN SA 10 284 IPR005707 GO:0003735|GO:0006412|GO:0015935
Rops7g01838 303 Gene3D - 19 224 - -
Rops7g01838 303 MobiDBLite consensus disorder prediction 249 303 - -
Rops7g01838 303 SUPERFAMILY Ribosomal protein S2 15 205 IPR023591 -
Rops7g01838 303 Hamap 40S ribosomal protein SA [rps-0]. 7 251 IPR027498 GO:0003735|GO:0006412|GO:0015935
Rops7g01838 303 FunFam 40S ribosomal protein SA 19 225 - -
Rops7g01838 303 CDD RPS2 23 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Rops7g01838 303 ProSitePatterns Ribosomal protein S2 signature 2. 124 148 IPR018130 GO:0003735|GO:0005840|GO:0006412
Rops7g01838 303 Pfam Ribosomal protein S2 120 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Rops7g01838 303 Pfam Ribosomal protein S2 23 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Rops7g01838 303 NCBIfam 30S ribosomal protein S2 15 211 IPR005707 GO:0003735|GO:0006412|GO:0015935
Rops7g01838 303 PRINTS Ribosomal protein S2 signature 124 141 IPR001865 GO:0003735|GO:0005840|GO:0006412
Rops7g01838 303 PRINTS Ribosomal protein S2 signature 50 59 IPR001865 GO:0003735|GO:0005840|GO:0006412
Rops7g01838 303 PRINTS Ribosomal protein S2 signature 141 152 IPR001865 GO:0003735|GO:0005840|GO:0006412
Rops7g01838 303 PRINTS Ribosomal protein S2 signature 162 176 IPR001865 GO:0003735|GO:0005840|GO:0006412
Rops7g01838 303 PRINTS Ribosomal protein S2 signature 99 116 IPR001865 GO:0003735|GO:0005840|GO:0006412
Rops7g01838 303 PRINTS Ribosomal protein S2 signature 20 38 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01838 Rops-Chr7 29407766 29411393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01838 1 286 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 72.474 1.33e-153 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01838 K02998 - gmx:100818292 515.768