Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01826 ATGTCGCAACCGCCGCTGCGGCCGCCTTCGAAGGCCACGATGGTACGTTGCGCCGCCTGCAGCACGGTCTACTATGCGGTGGCGGGGGTGACGGAGTTGCCATGCCCTAAATGTCAAATGCGGAACGCAATCGCTCGCGCCGTCGATCTCTCAGCGGCGCAGCTTCTCTGTTCTACATGCAAGGCACTCGTCAACGTGCCTAACGGCCTCTTGAAGTTCCCTTGCCCGCAGTGCAAGGTTAAGCTCGACGTCAACGTCGATGGTGAAGACGTCAACGAGCTAGTTGTTGAAGTGGAGCGGGATGAAGAGGATGGTGGTATGGCTGGCGAAACATTTACAGATTATCGACCAGCAAAGGTATCTATTGGATCTCCGCACCCAGATCCTGTTGTGGAGACTTCTTCCTTGTCTGCAGTGCAGCCACCAGAGCCTACTTATGATCCAAAGATTAAAGACGATTTGGAAAGTTCAAAGGCTTTGTCATGCTTGCAGATTGAGACATTGGTCTATACTTGTCAGAGACACCTTCAACACCTTCCCAATGGTGCTAGGGCCGGATTCTTTATTGGAGATGGAGCTGGTGTAGGTAAAGGTCGAACAATTGCAGGGCTAATTTGGGAGAACTGGCACCATGGGAGAAAAAAAACCTTGTGGATTTCTGTTGGTTCAGATTTGAAGTTTGATGCCAGAAGAGATTTGGATGATATGGGTGCAACTTGTGTTGAAGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTGAATCAAAGTCTGTTGGGGTTAGGGAGGGAGTTATTTTCTTGACATACAGTAGCCTCATAGCATCTTCTGAGAAAGGTCGTACCCGACTCCAGCAGCTTGTGCAGTGGTGTGGACCAGGGTTTGATGGTCTTATCATTTTTGATGAGTGTCATAAAGCAAAAAATTTGGTCCCTGAAGGTGGTAGGCAGCCGACACGAACTGGTGAAGTGGTGCTTGATATCCAGGCTCGACTCCCTGACGCTCGTGTTGTTTATTGCTCAGCTACTGGTGCATCTGAATCTCGCAATATGGCTTATATGGTTCGACTTGGCCTTTGGGGAGCTGGGACTTCTTTCTGTGATTTTGGTGAATTTCTAGATGCTCTTGAAAGAGGGGGTGTTGGAGCTCTAGAACTAGTTGCAATGGACATGAAAGCAAGGGGCATGTATTTATGTCGTACGCTTAGCTACAAGGGTGCCAACTTTGAAATTATTGAAGCACCATTAGAAGATGAGATGATGGACATGTATCAAAAGGCTGCAGAATTTTGGATAGAATTGCGTGAAAAATTGCTGTCTGCCATTGCCATCCTAAATGTGAAACCTAATTGTAGACAACTATGGTGTTTATACTGGGCAAGCCACCAGCGCTTCTTTAGACACTTGTGTATGTCTGCTAAAGTCCCTACTGTGGAGAGACTAGTGAAACAAGCATTAATGGAAGATAAGTGTGTAGTCATAGGTTTGCAGAGTACTGGGGAAGCAAGGACAGAGGAAGCTGTTTCAAAATATGGTTCTGAGCTTGATGACTTTGTTTCTGGACCTCGCGAATTGCTGCTAAAATTTGTTGAAGAAAATTACCCATTACCAGAAAAGCCTGAACTTCTCCCAGGAGAGGATGGTGTAAAGGAGCTTCAAAGGAAGAGGCACTTGGCAAGTCCTGATGTTTCAGTAAAAGGAAGAGTCAGGAAAGTAGCTAAGTTACAGCCTCCTAGTGATGCTGAAAGCGATGAAGAATCTGAAACTGCCTCTGCTCTTGAATCTTCTGATTCTGATTACGGACCAGAAGGGGATGAAAGTGTTGCCTCTGCTCTTGAATCTACAGACTCTGATTATGATGAGTTTCCGACTTGTGAAATTTGCAGCACTGAAGAGGAAGGGGAAAACTTGCTGCAGTGTTCCGACTGTGGTAAATTAGTCCATCACTCATGTTTGGTGCCCCCAATTGGCGATTTTGTTCCCAAAGAATGGACGTGTCATTTGTGCAAGGAAAAAACAGATGAGTATCTCCATGGAAGACATGACTACATAACTGAACTCCGGAAGAGGTATGACACAGCTTTGGAGCACAAGGCAAAAATACTAGAGATGATTCGTGCCTTGGATCTTCCAAATAATCCCTTGGATGATATTATTGACAAGTTAGGAGGCCCTGACAAAGTTGCAGAAATGACAGGAAGGAAAGGCATGCTTGTGAGGGCCCCTAATGGAAAGGGTGTGACTTATCAGGCTCGTAATACAAAAGATGTCACAATGGAGATGGTCAACATGCATGAAAAACAGCTATTTATGGATGCTAAGAAGTTGGTGGCTATCATCTCTGAAGCAGGATCAGCTGGTGTTTCGTTGCAGGCAGACAGAAGAGTGAGAAATCAGAAAAGGAGGGTTCATTTAACTCTAGAACTTCCATGGAGTGCCGATCGAGCAATTCAGCAGTTTGGAAGAACTCATCGGTCAAATCAAACTTCAGCACCAGAATACAGGTTACTATTTACTAACCTTGGTGGAGAACGCCGATTTGCATCAGTTGTTGCTAAGAGATTAGAATCTCTTGGTGCTTTGACTCAGGGGGACCGCAGGGCTGGCCCTTCATTAAGTGCTTATAATTATGACAGTGCATATGGAAAGAGGGCTCTGATGATTCTTTACAGAGGAATAATGGAACAGGATTCTTTTCCCGTTGTACCTCCAGGATGCTTATCCGACAGACCAGATACAATCCAAGGTTTCATTATGCAGGCAAAAGCTGCTCTTGTATCTGTTGGAATTGTTAGGGACACCATTCTTGGAGATGATAAAGATCCTGGAAGGTTATCTGGCCACATTAATGATTCAGATATGCATGATGTTGGACGATTCCTCAACCGGCTTTTGGGACTACCTCCTGAGACTCAAAATAGGCTATTTGAGTTATTTGTGAATATCTTGGATCTTCTTATTCAAAATGCTCGCATTGAAGGTAACCTTGACACTGGCATTGTTGACTTGAAAGCTAATGTCATTGAACTGCAAGGGACTCCAAAGACAGTCCATGTTGATCAAATGAATGGGGCTTCAACTGTTCTGTTCACATTCATCTTGGATCGTGGGACCTCATGGAAGTTGGCAAATACCATGCTGAATGAGAAGCAGAAGGATGGGCTCGGTTCATCTAATGACGGTTTCTACAAGTCCAAGAGGGAGTGGTTAGGAAGACGTCATTACATTTTAGCATTTGAAAGTTCTGCTTGGCCTATGTATAAGATAGTTCGTCCCCCTGTTGGAGAATCACCTCGGGAGATGCATCTGGCAGAATTAAAAAGAAAATATACAAAAGTTTCATCTTTAGAGGATGCTCAAACTGGTTGGGAACATGAATATGAAGCTTCATCTAAACAGTGCATGCATGGTCCCAATTGTCGGATTGGCAACTCCTGTACCGTTGGCTCAAGACTACTGGAAGTAAATGTCTTGGGTGGTGTCATTCTTCCTATTTGGGGAGCCATAGAAATGGCCCTTTCTAAGCAGCGCCGTCAAAGCCATAAGAGATTACGTGTTGTTCACGTAGAAACTACATCGGAAAACCTACATGTAGTTGGGCTTCTTGTTCCTAATGCAGCAGTTAAAACTGTGCTTCAAGGTTTAGCAGTGGTTCAGGAAGTCCGTGACTGA 3672 0.4491 MSQPPLRPPSKATMVRCAACSTVYYAVAGVTELPCPKCQMRNAIARAVDLSAAQLLCSTCKALVNVPNGLLKFPCPQCKVKLDVNVDGEDVNELVVEVERDEEDGGMAGETFTDYRPAKVSIGSPHPDPVVETSSLSAVQPPEPTYDPKIKDDLESSKALSCLQIETLVYTCQRHLQHLPNGARAGFFIGDGAGVGKGRTIAGLIWENWHHGRKKTLWISVGSDLKFDARRDLDDMGATCVEVHALNKLPYSKLESKSVGVREGVIFLTYSSLIASSEKGRTRLQQLVQWCGPGFDGLIIFDECHKAKNLVPEGGRQPTRTGEVVLDIQARLPDARVVYCSATGASESRNMAYMVRLGLWGAGTSFCDFGEFLDALERGGVGALELVAMDMKARGMYLCRTLSYKGANFEIIEAPLEDEMMDMYQKAAEFWIELREKLLSAIAILNVKPNCRQLWCLYWASHQRFFRHLCMSAKVPTVERLVKQALMEDKCVVIGLQSTGEARTEEAVSKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHLASPDVSVKGRVRKVAKLQPPSDAESDEESETASALESSDSDYGPEGDESVASALESTDSDYDEFPTCEICSTEEEGENLLQCSDCGKLVHHSCLVPPIGDFVPKEWTCHLCKEKTDEYLHGRHDYITELRKRYDTALEHKAKILEMIRALDLPNNPLDDIIDKLGGPDKVAEMTGRKGMLVRAPNGKGVTYQARNTKDVTMEMVNMHEKQLFMDAKKLVAIISEAGSAGVSLQADRRVRNQKRRVHLTLELPWSADRAIQQFGRTHRSNQTSAPEYRLLFTNLGGERRFASVVAKRLESLGALTQGDRRAGPSLSAYNYDSAYGKRALMILYRGIMEQDSFPVVPPGCLSDRPDTIQGFIMQAKAALVSVGIVRDTILGDDKDPGRLSGHINDSDMHDVGRFLNRLLGLPPETQNRLFELFVNILDLLIQNARIEGNLDTGIVDLKANVIELQGTPKTVHVDQMNGASTVLFTFILDRGTSWKLANTMLNEKQKDGLGSSNDGFYKSKREWLGRRHYILAFESSAWPMYKIVRPPVGESPREMHLAELKRKYTKVSSLEDAQTGWEHEYEASSKQCMHGPNCRIGNSCTVGSRLLEVNVLGGVILPIWGAIEMALSKQRRQSHKRLRVVHVETTSENLHVVGLLVPNAAVKTVLQGLAVVQEVRD* 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01826 1223 Pfam C-terminal domain on Strawberry notch homologue 713 1002 IPR026937 -
Rops7g01826 1223 SUPERFAMILY FYVE/PHD zinc finger 613 675 IPR011011 -
Rops7g01826 1223 ProSitePatterns Zinc finger PHD-type signature. 625 669 IPR019786 -
Rops7g01826 1223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 576 677 IPR013083 -
Rops7g01826 1223 FunFam Protein strawberry notch homolog 2 156 356 - -
Rops7g01826 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 769 873 IPR027417 -
Rops7g01826 1223 Gene3D - 159 357 IPR027417 -
Rops7g01826 1223 Pfam PHD-finger 625 672 IPR019787 -
Rops7g01826 1223 Pfam P-loop containing NTP hydrolase pore-1 125 425 IPR039187 -
Rops7g01826 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 380 IPR027417 -
Rops7g01826 1223 SMART PHD_3 624 670 IPR001965 -
Rops7g01826 1223 PANTHER STRAWBERRY NOTCH-RELATED 70 1218 IPR026741 GO:0006355
Rops7g01826 1223 MobiDBLite consensus disorder prediction 569 620 - -
Rops7g01826 1223 ProSiteProfiles Zinc finger PHD-type profile. 622 672 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01826 Rops-Chr7 29064514 29110089 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops7g01826 AAA_34 7.1e-132 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01826 K26273 - gmx:100808670 1896.71