Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01821 ATGGCTCCAATGACTCTCCCACCTGGATTTAGGTTCCACCCCACAGATGAAGAGCTTGTTGCTTATTACTTAGAAAGAAAAATAACAGGTCGTTCAATAGAGCTTGACATCATTGCAGAAGTTGATTTATACAAATGTGAACCTTGGGATTTGCCAGATAAATCATTCCTCCCAAGCAAAGACATGGAGTGGTATTTCTACAGTCCAAGAGACAGAAAGTACCCAAATGGGTCAAGAACTAATAGGGCAACAATAGCTGGTTATTGGAAAGCTACTGGGAAAGATAGGCCAGTGCACTCTCAAAAGAAACCAGTTGGAATGAAGAAGACATTGGTATTTTACAAAGGTAGAGCACCCCATGGGATTAGAACCAACTGGGTTATGCATGAATATCGCCTAATTGAATCAGTGCCTGGTGCTGCTTTCTCATCTTTGAAGGATTCCTATTCCTTGTGTCGCATTTTCAAGAAGGCAATTGAAATTCCAACCAAACCTAAAGAAGATGAACAAGCTGAGGATGCAAAGAAGGAACTCATGTGGGTCTCAGAAGAACAAGCATTAGGGGAAGACTCAAGTGGCACTGAGGTTTCAAGAGAAATTGAAACCATGGATGAGAAAGTTTTTAATCATGAACATCCAAAATTTCCTTGTGATGCTTCTTCTTCTGATGTCACTCAAGGAACATGTACCCCCACAGATACTTGTATAGCAGATGATTTTCATGCCCAATTTGCTTGTGATGAAGCAAACAGTGCAACTAATTCTTATACAATGGGAATAAGCTACCCCTCAAATCTATTTCAGGATATGGAAATAGCTATGTATGCTGGCATGCATTATCCACTCCCACAAACACCTTTGATGCTGGAAGATTTCCCACAAATAAATTTAATGGAGACAAAGTCAATGAAGCCTGAAATGACTGATGATTGCATGTTATATGACAGATACAGGGACTGTATGAATGGAACACTAGAAGAGATCATCTCTTTATGTTCCTCTCAAGACCATTCTGCTGCTTTTCCAATGGTAGAATGA 1038 0.3998 MAPMTLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATIAGYWKATGKDRPVHSQKKPVGMKKTLVFYKGRAPHGIRTNWVMHEYRLIESVPGAAFSSLKDSYSLCRIFKKAIEIPTKPKEDEQAEDAKKELMWVSEEQALGEDSSGTEVSREIETMDEKVFNHEHPKFPCDASSSDVTQGTCTPTDTCIADDFHAQFACDEANSATNSYTMGISYPSNLFQDMEIAMYAGMHYPLPQTPLMLEDFPQINLMETKSMKPEMTDDCMLYDRYRDCMNGTLEEIISLCSSQDHSAAFPMVE* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01821 345 FunFam Nac domain-containing protein 86 15 160 - -
Rops7g01821 345 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Rops7g01821 345 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 218 - -
Rops7g01821 345 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Rops7g01821 345 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Rops7g01821 345 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01821 Rops-Chr7 28958602 28961808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01821 1 342 NAC Transcription Factor Family AT1G54330 49.854 1.15e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops7g01821 NAM 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01821 - - gmx:100808325 625.55