Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01820 ATGGGCCATCGTTGCTGCAGCAAACAGAAGATCAAAAGAGGATTGTGGTCTCCTGAAGAAGATGAGAGACTTGTCAGATTTATCACCACTCATGGGCATAAAAGTTGGAGTTCTGTCCCAAAGTTAGCAGGCTTGCAGAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATCTGAGGCCAGATCTGAAAAGGGGTTCCTTCACTGCAGAAGAAGAGCAAATCATAATTGACATTCATAGAATTCTTGGAAACAGATGGGCCCAAATAGCAAAACACCTCCCTGGAAGAACAGACAACGAGGTCAAGAATTTCTGGAACTCTTGCATTAAAAAGAAGCTCATTTCTCAAGGTTTAGACCCACAAACCCACACTCTACTCTCTTCTCATAAGAGAAGCTCAACATGTAACATCTCTCATATCCATCAAAGTTCCAATTCCACTTTTATTATGAGTTCCCAGATACCAAATGCTGATCCCATGGAAACTAGTCAAACTTTTTCTTCACTATCTAAAGCTCCACCAAATATTACTCAAACACCCCCTACCATTGTTTCCTCTGAATTTCAAACATCTTGTGTTCTTCCAAATAAATTCTCAGATTTGCCTCATGAACTATTAACCAATGACATATCCAACATTTGTTATCCTTCATGGATGAACCCATCTGCGGTTGAATTGTCTCACAATGAGAATAATGTTTGGGTTTCAAGAATTGATGCTGAAGAATTTAGAGTTCAAACAAGGGAAGAAGAAGGAACACAAGCACGGGTGCAGCACGAGGACAAGACTAGTGAGAAGGGAATTGATGTGAGAGAAGCTAATAATGAGGGCAATCTTGAAATGAATGCTTCTTTGGAGAGTTCTAACTTTGATTTTGGGTTCTTGGAGAGTGTACTTACCTCAGAATTTATGTCTCATGATCTCAACTATATGGATGAACTTGCATGGAACTTTTAG 963 0.3956 MGHRCCSKQKIKRGLWSPEEDERLVRFITTHGHKSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHTLLSSHKRSSTCNISHIHQSSNSTFIMSSQIPNADPMETSQTFSSLSKAPPNITQTPPTIVSSEFQTSCVLPNKFSDLPHELLTNDISNICYPSWMNPSAVELSHNENNVWVSRIDAEEFRVQTREEEGTQARVQHEDKTSEKGIDVREANNEGNLEMNASLESSNFDFGFLESVLTSEFMSHDLNYMDELAWNF* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01820 320 CDD SANT 68 108 IPR001005 -
Rops7g01820 320 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Rops7g01820 320 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Rops7g01820 320 PANTHER MYB DOMAIN PROTEIN 55 1 275 - -
Rops7g01820 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Rops7g01820 320 FunFam MYB transcription factor 5 65 - -
Rops7g01820 320 SMART sant 65 113 IPR001005 -
Rops7g01820 320 SMART sant 12 62 IPR001005 -
Rops7g01820 320 FunFam Transcription factor MYB86 67 141 - -
Rops7g01820 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Rops7g01820 320 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Rops7g01820 320 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Rops7g01820 320 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Rops7g01820 320 CDD SANT 16 60 IPR001005 -
Rops7g01820 320 Gene3D - 13 65 - -
Rops7g01820 320 Gene3D - 68 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01820 Rops-Chr7 28887601 28889555 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01820 1 320 MYB Transcription Factor Family AT3G12720 50.926 6.20e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops7g01820 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01820 K09422 - gmx:100791209 481.485