Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01814 ATGGAAAGAATGTTCCCTCCAAAGAAGCCTTCAACTATGAATTCCCATGACAGACCCATGTGTGTTCAAGGGGACTCGGGTCTTGTCCTCACCACAGACCCAAAACCTCGTCTTCGTTGGACTGTTGAACTCCATGAACGCTTTGTTGATGCTGTTAATCAGCTTGGAGGGCCTGATAAGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACTCTTTACCACCTCAAGAGCCACCTTCAGAAATTCAGGCTTGGCAAGCAGCCCCACAAGGAATTCAATGATCACTCAATTAAGGATGGTATGAGAGCTTCGGCTTTAGAACTGCAACGAAACACTGCTTCTTCTTCTGCCATGATTGGTCGCAACATGAATGATAACTCACACATGGTTGATGCGATTAGGATGCAAATAGAGGTGCAGAGAAGATTGCATGAACAACTTGAGGTGCAAAAACGTCTTCAGCTAAGGATTGAGGCTCAAGGGAAATACATGCAAAGTATATTGGAGAAGGCTTATCAAACACTTGCTGGTGAAAACATGGCATCTGCTGCTACTAACTTAAAGGGTATTGGACCTCATCAAGGAATTCCTGACATGGGAATCATGAAAGAATTTGGTTCCCCTCTTAGTTTTTCTTCTTTTCAAGATCTTGACATCTATGGAGGTGGTGGTGACCAACTTGAGCTTCAGCAAAACATGGACAAGCCACCCCTTGATGGATTTATGCCAATCAATGAGAACTTATGTGTGGGGAAGAAGAGGCTTAACCCTTATAATGGGAATGGTAAGAGTCCTTTGATGTGGAGTGATGATCTTAGGCTTCAAGATTTGGGGACAGCCTCATCATGCCTTGGTCCTCAAGATGATCCTTTCAAAGGTGGACATATTCAAATTGCACCACCATCATTGGATAGAGGAACTGACATTGATCCCATGTCAGAGATCTATGACACAAAGCCTGTACTCCAAGGGGAAGCTGTAGGCGAAAAGAAATTTGATGGTTCTATGAAGCTTGAAAGGCCATCACCAAGAAGAGGACCTCTTCAAGCAGAAAGGATGAGTCCTATGATCAGTACTGGTACCATGGCACAAGGTAGAAACTCACCATTTGGGTGA 1131 0.4439 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVNQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAMIGRNMNDNSHMVDAIRMQIEVQRRLHEQLEVQKRLQLRIEAQGKYMQSILEKAYQTLAGENMASAATNLKGIGPHQGIPDMGIMKEFGSPLSFSSFQDLDIYGGGGDQLELQQNMDKPPLDGFMPINENLCVGKKRLNPYNGNGKSPLMWSDDLRLQDLGTASSCLGPQDDPFKGGHIQIAPPSLDRGTDIDPMSEIYDTKPVLQGEAVGEKKFDGSMKLERPSPRRGPLQAERMSPMISTGTMAQGRNSPFG* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01814 376 MobiDBLite consensus disorder prediction 337 351 - -
Rops7g01814 376 FunFam Myb family transcription factor 34 92 - -
Rops7g01814 376 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 203 IPR044848 GO:0003700
Rops7g01814 376 MobiDBLite consensus disorder prediction 1 20 - -
Rops7g01814 376 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Rops7g01814 376 Pfam MYB-CC type transfactor, LHEQLE motif 134 179 IPR025756 -
Rops7g01814 376 MobiDBLite consensus disorder prediction 359 376 - -
Rops7g01814 376 Gene3D - 34 92 - -
Rops7g01814 376 MobiDBLite consensus disorder prediction 337 376 - -
Rops7g01814 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Rops7g01814 376 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Rops7g01814 376 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01814 Rops-Chr7 28810762 28812891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01814 4 376 G2-like Transcription Factor Family AT1G79430 57.772 2.44e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops7g01814 Myb_DNA-binding 4.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01814 - - gmx:100807793 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g01814 7 28810762 28812891 Rops7g01814 7 28810762 28812891 ECH
Rops7g01814 7 28810762 28812891 Rops3g02265 3 45047057 45050014 PCT