Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01778 ATGGAGCATCCTCAGCTGCTGGACCAAAACTTTCCACTCTTCAAATCAACTCGAAAACCCTCCAAAATCCCCTCACCCCCCACTGCCGCCGCCGCCAACAATAAAAACCCTAATTCCGACACCGTAAACCCCGAAGAAAGTGCTGCCGGAAACCCCGAAGACAGCGCTGCCACCTCTTCCACCACGTTCGAGGATCTAGGACTAGCGGAATGGGCGGTGAAGACGTGCAAGGAGCTCGGGATGCGTATGCCGCGGCGTGTGCAGCAGCAGTGCATCCCGAAGGTTCTTGAAGGCCGCCACGTGCTTGGCATTGACGAGACCGGTAGCGGCAAAACGGCTGCGTTCGCACTCCCAATCCTTCACCGTCTCTCCAAGCACCCGTTCGGTGTTTTCGCCCTCGTGGTTACGCCCACGCGCGAGCTTGCGTTCCAACTCGCCGAGCAGTTCCGTGCCCTAGGATCCTCCCTCCGCCTCCGCATCGCGGTGGTGGTTGGTGGCATGGACATGCTCAAACAGGCCAAGGAATTGGTTGCCAGGCCTCACCTCGTCATTGCCACCCCCGGGAGGATCAAGGCCTTGCTGGAGGAGAATCCTGATATTCCTCCTGTTTTCTCTAGGATTAAGTTCCTTGTCTTGGATGAAGCAGATCGAGTCTTGGATGTTGGTTTTCAGGAGGAATTGAAATTTCTCTTTCAGTGCTTACCAGAAAATAGGCAAAACCTGTTCTTTTCTGCAACAACAACAAGTAATCTGCAGAAGTTGCGTGATCGTTACCAAGATAAGATGTATGTCTATGAGGCATATGAAGGCTTCAAAACAGTTGAAACACTTAAGCAACAGGTTATATTCATCCCTAAGAAGGTGAAGGATGTATATTTGATGTATATCTTGTCTAAAATGGAAGACATGGACATTCGATCTGCCATAGTATTTATCTCTACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCAAGAAGCTACAGCTCTATATTCATTCAAATCACAGACTCAGAGGCTTGAAGCACTTCAGCAATTTAAATCGGGAAAGGTTTCTATACTACTGGCAACTGATGTTGCTAGCCGTGGTTTGGATATTCCTACAGTCGACCTTGTTATCAATTACGATGTTCCAAGGTTTCCCCGAGATTATATTCATCGTGTAGGTCGTACTGCAAGAGCAGGTAGAGGAGGACTAGCTTTGAGCCTTGTCACCCAGAACGATGTTGATCTCATTCGTGAAATAGAAGCTCTTATTGAAAGGCAGCTTGAAATGATTGAATACAAAGAAACTGAGGTGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAAAATGTGGCAGGAATGAAGATGATGGATGATGGCTTTGAGGAGAAAGCAAAAGAGCGGAAAAAACAGAAACTGAAAATGCTAGCGGAGAAAGGATTGTTAAAGAAAAGAAAACTTTCTCATGGGGATCAAGTAGTCGAAACGGAGGTTGCTGAAGAAGAAGAAGATAGAGAACCAGAGGAAGAAGATATTCAAATCCTCGATAACAAAAATCGAGATGGGCCTAATAGTGGGGAGCAAGAAAACCAAGAGGACGATGCTGAGGCTATGTATGATCAACAAGCTTCAGATTCCATCCAACAGTCTTCTGAAGGCCAATCTTCTCAAGAAGCCTCAAGTCATAGTGTTTCTTCTCCTTCCAAGGCACCGGTCATTGTCTAA 1725 0.4672 MEHPQLLDQNFPLFKSTRKPSKIPSPPTAAAANNKNPNSDTVNPEESAAGNPEDSAATSSTTFEDLGLAEWAVKTCKELGMRMPRRVQQQCIPKVLEGRHVLGIDETGSGKTAAFALPILHRLSKHPFGVFALVVTPTRELAFQLAEQFRALGSSLRLRIAVVVGGMDMLKQAKELVARPHLVIATPGRIKALLEENPDIPPVFSRIKFLVLDEADRVLDVGFQEELKFLFQCLPENRQNLFFSATTTSNLQKLRDRYQDKMYVYEAYEGFKTVETLKQQVIFIPKKVKDVYLMYILSKMEDMDIRSAIVFISTCRDCHRLSLMLEVLDQEATALYSFKSQTQRLEALQQFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIREIEALIERQLEMIEYKETEVLSLMKKVFSAKNVAGMKMMDDGFEEKAKERKKQKLKMLAEKGLLKKRKLSHGDQVVETEVAEEEEDREPEEEDIQILDNKNRDGPNSGEQENQEDDAEAMYDQQASDSIQQSSEGQSSQEASSHSVSSPSKAPVIV* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01778 574 Gene3D - 272 557 IPR027417 -
Rops7g01778 574 MobiDBLite consensus disorder prediction 496 510 - -
Rops7g01778 574 MobiDBLite consensus disorder prediction 541 568 - -
Rops7g01778 574 SMART ultradead3 80 280 IPR014001 -
Rops7g01778 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 420 IPR027417 -
Rops7g01778 574 MobiDBLite consensus disorder prediction 1 61 - -
Rops7g01778 574 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 92 265 IPR014001 -
Rops7g01778 574 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 54 542 - -
Rops7g01778 574 MobiDBLite consensus disorder prediction 10 61 - -
Rops7g01778 574 Pfam Helicase conserved C-terminal domain 293 400 IPR001650 -
Rops7g01778 574 SMART helicmild6 319 400 IPR001650 -
Rops7g01778 574 MobiDBLite consensus disorder prediction 511 527 - -
Rops7g01778 574 CDD DEADc_DDX49 63 266 - -
Rops7g01778 574 Pfam DEAD/DEAH box helicase 86 254 IPR011545 GO:0003676|GO:0005524
Rops7g01778 574 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 211 219 IPR000629 -
Rops7g01778 574 CDD SF2_C_DEAD 277 409 - -
Rops7g01778 574 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 276 439 IPR001650 -
Rops7g01778 574 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 61 89 IPR014014 GO:0003724
Rops7g01778 574 Gene3D - 51 265 IPR027417 -
Rops7g01778 574 MobiDBLite consensus disorder prediction 486 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01778 Rops-Chr7 27977881 27988206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01778 61 429 Eukaryotic Initiation Factors Gene Family AT3G19760 28.919 2.03e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01778 K14778 - gmx:100804060 753.436