Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01749 ATGAATGGAGAATGGCAAACCAAGGATGCAAAGCTGGTACCTTATCAAAAGTACCTGACTCAACTGATTGCCAAATTTGAAGAAGTGACTTTCTCTCATATGAGTCGAGATAAGAATCAATTCGCAGATGCACTAGCCACACTGGCCGCGATGTCCAAGTTAAATGTGTGCACTGAAGTACAGCCCATCCAAATTGGAACACAAGATGCGCCGACATATTACGCCGATGTGGAAGATGACCCGGAGGATGAGCCTTGGTACCACGATATCAAGCGATACATCCAACATAGAGAATACCCAGTTGGGGCAAGTGAAGCAGACAAAAAGACTATTCGCCGATTGTCAATAGCATTTTTCTTGAATAGGGAAACTCTTTATAAACGGAGCTACGACGGTACACTACTAAGGTGTGTGGATGCTCAAGAGGCTCGTTTAATCATGACGGAGGTACATGAAGGGATTTGTGGGACCCACGCTAATGGGCACATGATGGCCCGAAAGATCATGAGGAGTGGGTATTATTGGTCTACCATGGAGGTTGATTCTATGGGGTATGCGCGAAAATGTCAGAAATGTCAAAAATATGCTGATCAGATCAAGGCACCTCCGTTCCCGTTGCACAATTTGGTCTCCCCTTGGCCATTCTCAATGTGGGGAATAGATGTCATTGGACCAATTAATCCGAAGGCCTCAAATGGGCACCGCTTTATTTTGGTAGCAATTGATTACTTCACCAAATGGATCGAAGCATCTTCGTACGCTAGCATTTCCCAGAAAGTGTTTGCTAGGTTTCTCAAAAAGGACATTATCTGCCGATATGGAATTCCGGAAAGAATAATCACAGATAATGCGCCTAACCTTAATGGCTCAGAGATACAGAAGCTCTGCGAGCATTTCAAGATCAAGCATCACAACTCGGCTCCTTACAGACCTCAGATGAATGGTGCAGTTGAGGCAGCAAATAAGAACATCAAGAAGATTGTGGCGAAGATGACAGAGAATTACAAGGATTGGCATGAAAAGTTACCCTATGCTCTGCATGCGTATCGTACAAATATACGCTCGAGTACTGGGACAACGCCATTCTCCTTGGTGTATGGAATGGAGGCTGTTTCACCCATCGAGGTGGAAATTCCTAGGGATTGTGTCAAGGTAGGATGGGAAGAGCATTCAATAAGAAAGTTCGACCTAGGGATTTCTCTTCCGGAGACTTGAAAGACCTCGACTTCAACAACTGATCATCTAGAAAAGGATGGTGGTGATAACAAGAGTAAGAAGAAGTGGAAGCTATGGACGACCTCTTCAGAATGGTCTTCTACCTCCATGAAGAAGGGTGATGCTGCTGTATCTGATTCTTCTTCGCTTACTGCAGCTGTGGTTGTGATGGCTCTGTTTCGAGCCTTCTTGGCTAGACGAGCTTTGAGGGCCTTGAAGGTAGTGGTAAGGCTGCAAGCTATATTTCGAGGCCGTCTAGTCAGAAATCAAGCAGCTGTTACTCTAAGGTGCATGCAGGCTCTTGCTCGAGTTCAGGCACGTGTAAGGGTTAGGAATGTGAGGAACGCTCCAGAAGGGAAAGAAGTGCAGAAGTTATTAAAAGAGCATCGCAACCAAGTTGATCCTGTCAAGATGGTTGAGCAAGGATGGTGGGACATTCTTGGAACTGTGGATGAAGTTAAAACAAAGCTAACAATGAGGCAAGAAGGAGCCATCAAGAGGGATAGAGCAATGGCATACTCTCTCGCCACACAACAATCAAGACTCGAGCTCCTCAACAGAGAAGCATGGGCCACGTTACATTGGAGAGATACAGCACGCCTGTTGAAGGTTGCTTCCTCGGGAAAAACTGGACGAAGAAACCAAGGCAGCCCTAGTGATAAAAGGGGGAAGCCTCAACGGATGGAGGCTCGGAGGGGGGTTGTTTTGAAGAGAGCTGGAGATTGA 1941 0.4601 MNGEWQTKDAKLVPYQKYLTQLIAKFEEVTFSHMSRDKNQFADALATLAAMSKLNVCTEVQPIQIGTQDAPTYYADVEDDPEDEPWYHDIKRYIQHREYPVGASEADKKTIRRLSIAFFLNRETLYKRSYDGTLLRCVDAQEARLIMTEVHEGICGTHANGHMMARKIMRSGYYWSTMEVDSMGYARKCQKCQKYADQIKAPPFPLHNLVSPWPFSMWGIDVIGPINPKASNGHRFILVAIDYFTKWIEASSYASISQKVFARFLKKDIICRYGIPERIITDNAPNLNGSEIQKLCEHFKIKHHNSAPYRPQMNGAVEAANKNIKKIVAKMTENYKDWHEKLPYALHAYRTNIRSSTGTTPFSLVYGMEAVSPIEVEIPRDCVKVGWEEHSIRKFDLGISLPET*KTSTSTTDHLEKDGGDNKSKKKWKLWTTSSEWSSTSMKKGDAAVSDSSSLTAAVVVMALFRAFLARRALRALKVVVRLQAIFRGRLVRNQAAVTLRCMQALARVQARVRVRNVRNAPEGKEVQKLLKEHRNQVDPVKMVEQGWWDILGTVDEVKTKLTMRQEGAIKRDRAMAYSLATQQSRLELLNREAWATLHWRDTARLLKVASSGKTGRRNQGSPSDKRGKPQRMEARRGVVLKRAGD* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01749 645 Gene3D - 1 61 IPR036397 GO:0003676
Rops7g01749 645 Pfam Reverse transcriptase-like 1 48 IPR002156 GO:0003676|GO:0004523
Rops7g01749 645 ProSiteProfiles IQ motif profile. 477 504 IPR000048 GO:0005515
Rops7g01749 645 MobiDBLite consensus disorder prediction 619 645 - -
Rops7g01749 645 SUPERFAMILY Ribonuclease H-like 212 375 IPR012337 -
Rops7g01749 645 MobiDBLite consensus disorder prediction 608 645 - -
Rops7g01749 645 Gene3D - 208 389 IPR036397 GO:0003676
Rops7g01749 645 ProSiteProfiles IQ motif profile. 455 481 IPR000048 GO:0005515
Rops7g01749 645 ProSiteProfiles Integrase catalytic domain profile. 210 369 IPR001584 GO:0015074
Rops7g01749 645 Pfam Integrase zinc binding domain 138 196 IPR041588 -
Rops7g01749 645 Pfam Integrase core domain 214 311 IPR001584 GO:0015074
Rops7g01749 645 Gene3D - 104 195 - -
Rops7g01749 645 PANTHER ENDONUCLEASE-RELATED 109 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01749 Rops-Chr7 27468496 27474319 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01749 411 582 IQD Protein Family AT1G72670 47.115 4.82e-44 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01749 - - lang:109342423 598.586