Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01736 ATGGCACTTAGCACATACTTCAACTGGGACACTCTTCAAATTCCCTATTCAGAAATGAGCAACTTCCATGAAACAACATCAGAACTAGCACCACCCCACCACTTTTCCTATTCAGATGAAAGCATCTTCCTTCCAAACACCACCCTCTTTGATTCCTATTTTGACCCAACTGGTTTTCTCTACCCTGAGATCAACCCTCATCAGTTCCTTTCTTGCACTTCTTATGAAGAACCCCTCATTTCACTCAATGAAATTTTCCCAACTGAAAATGACAACTTCCTCCCATGCCCAAAACGCCAAAAGTGCAGTTATGAGGAAGAAGAGCTTGTGCAATCTTCAATGCAGGAAGTTATACCATCCAATTTCTTTGATGGGTTTTTGCCTAATCCTTGTTCCTTGCAAGCAGAGGAAGTGCCAGAACTCTTCTCTTCAGTGCACGAGTTTAAGGTTCCACAACTTCCACAACCACAGGGTACTTGTGTTGTTGTGGGAAATGCTGAATTTCAGTGTGAGAAGAAAACCAATGAGAGAACCATCTCGGCTCAGAGCATAGCAGCCAGAGAAAGAAGGAGAAAGATCACTGAAAAGACCCAAGAACTTGGGAAGTTGGTTCCTGGTGGACTTAAGATGAACACAGCTGAGATGTTTCATGCAGCTGCTAAGTATGTCAAGTACCTTCAAGCCCAAGTTGGAATGCTTCAACTTATGAACACACTCAAGGAAGATAATGCAGCTCCTCCTCCAACTGAAGATCTACACTCCTTAGTTGTTTCTCCCATTATTCAAGAGAAGCTCTACTCTGAGGAAAGGTGCTTTGTCCCAAAAGAATTTGTCACGACTTTGACAAATCATGATGATGTTCGATCAAGACCTGTCATCCTTAAAGATCTTAAACAACTGATTGGGTCAGACATTGAAAAGAGAACTAAACAAGAATAA 939 0.4196 MALSTYFNWDTLQIPYSEMSNFHETTSELAPPHHFSYSDESIFLPNTTLFDSYFDPTGFLYPEINPHQFLSCTSYEEPLISLNEIFPTENDNFLPCPKRQKCSYEEEELVQSSMQEVIPSNFFDGFLPNPCSLQAEEVPELFSSVHEFKVPQLPQPQGTCVVVGNAEFQCEKKTNERTISAQSIAARERRRKITEKTQELGKLVPGGLKMNTAEMFHAAAKYVKYLQAQVGMLQLMNTLKEDNAAPPPTEDLHSLVVSPIIQEKLYSEERCFVPKEFVTTLTNHDDVRSRPVILKDLKQLIGSDIEKRTKQE* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01736 312 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 179 276 IPR045843 GO:0003700|GO:0006355
Rops7g01736 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 237 IPR036638 GO:0046983
Rops7g01736 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 226 IPR011598 GO:0046983
Rops7g01736 312 FunFam Transcription factor bHLH52 179 247 - -
Rops7g01736 312 Pfam Helix-loop-helix DNA-binding domain 183 227 IPR011598 GO:0046983
Rops7g01736 312 SMART finulus 183 232 IPR011598 GO:0046983
Rops7g01736 312 Gene3D - 174 245 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01736 Rops-Chr7 27198006 27200093 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01736 93 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 41.176 4.78e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops7g01736 HLH 0.00024 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01736 - - gmx:102665938 335.88