Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01710 ATGGGAAAAGGAAGAGCACCATGCTGTGATAAGACAAAAGTTAAGAGAGGTCCTTGGAGCCCTGCAGAAGATCTTAAGCTCATAGCTTTCATTCAGAAACATGGCCATGAAAATTGGCGTGCTCTTCCCAAACAAGCAGGGCTTCTACGATGTGGGAAAAGTTGTCGTTTGAGATGGATCAATTATCTCAGGCCTGATGTAAAGAGAGGCAATTTTACAACAGAGGAAGAAGAAACCATAATTAGGCTTCACAAGGCCTTGGGAAACAAGTGGTCAAAAATTGCATCCGGTTTGCCTGGTAGAACTGACAATGAGATCAAGAATGTATGGAACACTCATTTAAAGAAAAGATTGAATGTGAAAAGTTCAGAGTCTAGTGCAGATGAATCTAAGTTGGAATCATCAATAACTTCCTCTTCTTCATCCTCATCTGAATCATTTTTATCAAATGAGAGACCAAATCTAGCAAAGACTACTCCTGGTGATGAATTTAAAGAGCAAGGTTCCCAAGTGACAATGACAGATAAAATTGAACAAGATTCAGAAAAACAAGTATCCAATGAACTTATTGGCATCACTGAAGATCTACTAAAAGAGTCACCAACTTCATTATCTTCTGTTGAGTCAAGTATCTTAAACTCTAGCCAGATTGTTGCCTACAAACCAGAGCAACAACAATTGGCTTCTCCATTAACCTATTTAGGACCTTATGATGTTGACAATACATTACAAGAGGTGGATAAACCAAACCATCTTCTTGAAATACCATGGGAATCAGATTCTGATTTTTGGAAGTTGTTAGATAACTTTGAATCTTTCCAATCAAATGAAGTTCAATTAGGGGAGTTCTCAGCCAGTCAAAGCCATAATTTTGGAGAAGAGATTGTTCAAGATGCTGAAGCCAGAGAGTGGTCCCATGACTTTGAGAACAAGTTTGGAGTAGGTGAAACAATGGAGGAGTCAAACAAGGATCAGTTCCAACCAAAGAATTATGCAGTTGAGCCAGAAATAGACCCTCAGACATTTGATTTCAATGATATGACAAGGATAGAATCTGAATTAGACTTGGGTTATATTCAATTATGGCCCTCTTCTTGGCCTCAAAATACTAGTCTTTAA 1119 0.3825 MGKGRAPCCDKTKVKRGPWSPAEDLKLIAFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTTEEEETIIRLHKALGNKWSKIASGLPGRTDNEIKNVWNTHLKKRLNVKSSESSADESKLESSITSSSSSSSESFLSNERPNLAKTTPGDEFKEQGSQVTMTDKIEQDSEKQVSNELIGITEDLLKESPTSLSSVESSILNSSQIVAYKPEQQQLASPLTYLGPYDVDNTLQEVDKPNHLLEIPWESDSDFWKLLDNFESFQSNEVQLGEFSASQSHNFGEEIVQDAEAREWSHDFENKFGVGETMEESNKDQFQPKNYAVEPEIDPQTFDFNDMTRIESELDLGYIQLWPSSWPQNTSL* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01710 372 FunFam MYB transcription factor 70 145 - -
Rops7g01710 372 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Rops7g01710 372 MobiDBLite consensus disorder prediction 120 184 - -
Rops7g01710 372 Gene3D - 71 141 - -
Rops7g01710 372 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 213 - -
Rops7g01710 372 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Rops7g01710 372 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Rops7g01710 372 MobiDBLite consensus disorder prediction 129 156 - -
Rops7g01710 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Rops7g01710 372 CDD SANT 71 114 IPR001005 -
Rops7g01710 372 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Rops7g01710 372 CDD SANT 18 63 IPR001005 -
Rops7g01710 372 Gene3D - 16 68 - -
Rops7g01710 372 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Rops7g01710 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Rops7g01710 372 FunFam Transcription factor RAX3 9 69 - -
Rops7g01710 372 SMART sant 68 116 IPR001005 -
Rops7g01710 372 SMART sant 15 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01710 Rops-Chr7 26712300 26715300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01710 1 274 MYB Transcription Factor Family AT1G79180 48.208 3.55e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops7g01710 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01710 K09422 - gmx:100101836 532.332