Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops7g01689 ATGGGTATTAACGATGATTTCACCAAGGATGATGAGTATTTGGACGATGAAGTTCCCCTTCCAGGATTTCGTTTCCATCCCACAGATGAAGAACTTGTTAGTTTCTATCTTAGAAGGAAGCTTGATAAGAAGCCTATCAGTATAGAGCTCATCAAACAGATTGATATCTACAAATATGATCCTTGGGATCTTCCAAGAGCCAGTGTTACAGGAGGAGATAAGGAGGGGTACTTCTTTTGCAAGAGAGGGAGAAAGTATAGGAATAGCGTAAGGCCTAATAGAGTTACTGGCTCTGGGTTCTGGAAAGCCACTGGCATAGACAAGCCAGTGTACTCACATGGAGGAGAAGGCAATGACTGTGTTGGACTCAAGAAAACTCTAGTATACTACCGTGGCAGTGCAGGCAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGCCTTCCTTCCAATACTGACACCAACACCAACCTCAAGAATCATGTAGATACTGCCCTAGAAGCTGAAATTTGGACATTGTGTAGAATTTTCAAAAGAAATGTGCAACAAAGAAAGAAAATGCAAGAGTTGAGACAATGTGCTAAGCGTCAGTCCATTCATGAGAAGAGCAGCAGAATGAGCAGTGTGGAGTTTAACACTAATCAAGAAAAGTATATCAATTTTGGTGGTGCAAGCATTGACCCTTATGACAATGAGCAGAAACCCGTCACTAATTACACAAGCAGTGATCAAAGGAATAATCAGTTTCATGTAAGCCAGTTGAGCTCTCCAGTGGCACAGCAACCTCAACTAAATGGACAATCTTCGAACTTCTGGGTTAACCCAGCTGCAAATGACTTCTTCACATTTGATCACTGGGATGAGCTTGGATCAGTTGTGAAGTTTGCTCCTTAG 897 0.4225 MGINDDFTKDDEYLDDEVPLPGFRFHPTDEELVSFYLRRKLDKKPISIELIKQIDIYKYDPWDLPRASVTGGDKEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSHGGEGNDCVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNTDTNTNLKNHVDTALEAEIWTLCRIFKRNVQQRKKMQELRQCAKRQSIHEKSSRMSSVEFNTNQEKYINFGGASIDPYDNEQKPVTNYTSSDQRNNQFHVSQLSSPVAQQPQLNGQSSNFWVNPAANDFFTFDHWDELGSVVKFAP* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops7g01689 298 MobiDBLite consensus disorder prediction 224 244 - -
Rops7g01689 298 Pfam No apical meristem (NAM) protein 21 149 IPR003441 GO:0003677|GO:0006355
Rops7g01689 298 SUPERFAMILY NAC domain 17 180 IPR036093 GO:0003677|GO:0006355
Rops7g01689 298 FunFam NAC domain-containing protein 35 28 183 - -
Rops7g01689 298 Gene3D NAC domain 28 185 IPR036093 GO:0003677|GO:0006355
Rops7g01689 298 ProSiteProfiles NAC domain profile. 19 180 IPR003441 GO:0003677|GO:0006355
Rops7g01689 298 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops7g01689 Rops-Chr7 25933229 25935277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops7g01689 16 180 NAC Transcription Factor Family AT1G26870 64.458 8.24e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops7g01689 NAM 2.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops7g01689 - - gmx:100790471 473.396